Table 3.
The best free binding energies calculated values (EFEB) and root-mean-square deviation of atomic positions (rmsd l.b. & u.b.) of PDB ligands, luteolin 5-methyl (1) ether and cirsilineol (2) for four various Homo sapiens aryl hydrocarbon receptor
| AhR receptor | PDB ligand | luteolin 5-methyl | cirsilineol | ||||||
|---|---|---|---|---|---|---|---|---|---|
| EFEB (kcal/mol) | rmsd l.b. | rmsd u.b. | EFEB (kcal/mol) | rmsd l.b. | rmsd u.b. | EFEB (kcal/mol) | rmsd l.b. | rmsd u.b. | |
| 5UFP | -7.0 | 0.000 | 0.000 | -6.3 | 0.880 | 2.030 | -6.8 | 1.436 | 2.132 |
| 5TBM | -10.2 | 0.000 | 0.000 | -6.3 | 0.988 | 2.082 | -7.5 | 1.150 | 2.570 |
| 4XT2 | -9.0 | 0.000 | 0.000 | -6.7 | 1.018 | 2.112 | -7.3 | 1.133 | 2.422 |
| 3H82 | -7.1 | 0.000 | 0.000 | -6.3 | 1.071 | 2.149 | -7.1 | 1.854 | 1.871 |