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. 2020 Nov 16;476(2):1179–1193. doi: 10.1007/s11010-020-03981-7

Table 4.

Summary binding energy results of the selected PoPEx constituents on the selected protein targets

Protein target Compound Binding energy [kcal/mol] Interacting amino acid residues
S glycoprotein Punicalin −7.406 Ser 371, Leu 368, Val 367
Punicalagin −7.312 Asn 343, Asn 370, Ser 371, Leu 335, Leu 368, Phe 342
Lopinavir −6.508 Ala 363, Asp 364, Leu 335, Leu 368, Phe 374, Val 362
Ellagic acid −6.114 Ala 372, Phe 377, Tyr 369
Umifenovir −5.821 Cys 336, Leu 368, Phe 338, Phe 342, Val 362, Val 367
Gallic acid −4.808 Phe 374, Tyr 369
ACE2 Lopinavir −7.512 Asn 290, Asp 367, Glu 406, Ile 291, Leu 370, Lys 441, Met 366, Thr 276, Thr 445
Punicalin −7.353 Asn 290, Asp 292, Asp 367, Lys 441, Ser 280
Punicalagin −7.144 Asp 292, Lys 441, Phe 428, Pro 289
Ellagic acid −6.854 Asp 292, Asp 367, Gln 442, Lys 441
Umifenovir −6.558 Ala 413, Asp 367, Glu 406, Leu 370, Leu 410, Lys 441, Ser 409
Gallic acid −5.244 Gln 442, Ile 291, Lys 441, Thr 445
Furin Punicalin −9.725 Asp 258, Glu 257, Gly 255, His 194, Pro 256, Ser 368, Thr 365
Punicalagin −9.385 Arg 298, Asp 259, Gly 366, His 194
Ellagic acid −7.801 Ala 532, Arg 490, Gly 307, Ser 311, Trp 531
Gallic acid −7.486 Asp 258, Asp 301, Asp 306, Cys 303, Glu 257, Pro 256, Thr 262
Sulconazole −6.923 Ala 532, Phe 528, Trp 531, Val 263
TMPRSS2 Punicalin −8.168 Arg 87, Arg 91, Arg 405, Asn 97, Met 404
Punicalagin −7.358 Arg 87, Arg 91, Arg 405, Asn 97, Gly 408, Met 404
Camostat −7.069 Arg 87, Arg 405, Asn 97, Met 404, Phe 99
Ellagic acid −6.829 Arg 87, Arg 405
Gallic acid 5.709 Ala 88, Arg 91, Asp 92, Asp 129, Tyr 401

ACE2- angiotensin converting enzyme 2; TMPRSS2 - transmembrane serine protease 2