Table 2|.
SNPs with high selection frequency and important gene mapping results in 8 super-variants.
Super-variant | Chr | SNP name | position | Minor allele | Major allele | MAF | OR | p-value |
---|---|---|---|---|---|---|---|---|
chr2_197 | 2 | rs73060484 | 196364477 | C | A | 0.069 | 1.945 | 6.0×10−4 |
rs77578623 | 196369073 | T | C | 0.070 | 1.939 | 6.2×10−4 | ||
rs74417002 | 196384505 | G | A | 0.034 | 1.832 | 3.0×10−2 | ||
rs73070529 | 196412097 | A | C | 0.048 | 2.249 | 3.6×10−4 | ||
rs113892140 | 196439005 | A | G | 0.044 | 2.031 | 2.8×10−3 | ||
rs200008298 | 196602155 | AATACT | A | 0.032 | 1.8 | 3.1×10−2 | ||
rs183712207 | 196611282 | A | G | 0.007 | 4.783 | 7.7×10−3 | ||
rs191631470 | 196859045 | T | C | 0.007 | 3.335 | 3.9×10−2 | ||
rs2176724 | 196952410 | A | G | 0.138 | 1.484 | 6.1×10−3 | ||
chr2_221 | 2 | rs71040457 | 220294782 | A | AG | 0.355 | 1.331 | 7.7×10−3 |
chr6_148 | 6 | rs117928001 | 147514999 | T | C | 0.049 | 2.749 | 1.1×10−5 |
rs116898161 | 147538692 | G | A | 0.046 | 2.541 | 6.9×10−5 | ||
chr7_23 | 7 | rs13227460 | 22588381 | T | C | 0.278 | 1.3 | 2.6×10−2 |
rs55986907 | 22817292 | T | C | 0.286 | 1.601 | 3.5×10−5 | ||
chr8_99 | 8 | rs7817272 | 98140470 | C | T | 0.194 | 1.736 | 1.7×10−5 |
rs4735444 | 98140991 | T | C | 0.201 | 1.784 | 5.8×10−6 | ||
rs1431889 | 98141643 | C | G | 0.193 | 1.704 | 3.5×10−5 | ||
rs2874140 | 98142930 | T | A | 0.194 | 1.694 | 4.0×10−5 | ||
rs531453964 | 98143128 | CA | C | 0.185 | 1.849 | 3.2×10−6 | ||
rs7007951 | 98146644 | T | C | 0.184 | 1.711 | 4.4×10−5 | ||
rs920576 | 98147539 | C | T | 0.201 | 1.615 | 1.6×10−4 | ||
chr10_57 | 10 | rs9804218 | 56495374 | G | C | 0.357 | 1.373 | 3.3×10−3 |
chr16_4 | 16 | rs2301762 | 3550977 | G | C | 0.055 | 2.541 | 2.0×10−5 |
chr17_26 | 17 | rs60811869 | 25590833 | C | T | 0.024 | 2.966 | 6.5×10−4 |
rs117217714 | 25987181 | C | T | 0.013 | 6.255 | 3.3×10−5 |