Table 1.
Description of Thai S-IAV-H1N1 and S-IAV-H3N2 characterized in this study.
| Virus | Subtypea | Year | Host | Age | GenBank no |
|---|---|---|---|---|---|
| S-IAV-H1N1 | |||||
| A/swine/THA/CU3732/2017 | rH1N1 (pdm + 2) | Jan-17 | Swine | 4 weeks | MT378014-21 |
| A/swine/THA/CU3743/2017 | rH1N1 (pdm + 2) | Jan-17 | Swine | 6 weeks | MT378022-29 |
| A/swine/THA/CU3759/2017 | rH1N1 (pdm + 2) | Apr-17 | Swine | 4 weeks | MT378030-37 |
| A/swine/THA/CU3764/2017 | rH1N1 (pdm + 2) | Apr-17 | Swine | 6 weeks | MT378038-45 |
| A/swine/THA/CU3770/2017 | rH1N1 (pdm + 2) | Apr-17 | Swine | 6 weeks | MT378046-53 |
| A/swine/THA/CU3793/2017 | rH1N1 (pdm + 2) | Jun-17 | Swine | 4 weeks | MT378062-69 |
| A/swine/THA/CU3802/2017 | rH1N1 (pdm + 1) | Jun-17 | Swine | 6 weeks | MT378086-93 |
| A/swine/THA/CU3803/2017 | rH1N1 (pdm + 1) | Jun-17 | Swine | 6 weeks | MT378094-01 |
| A/swine/THA/CU3798/2017 | rH1N1 (pdm + 1) | Jun-17 | Swine | 4 weeks | MT378078-85 |
| A/swine/THA/CU21299/2018 | rH1N1 (pdm + 1) | Apr-18 | Swine | 6 weeks | MT377918-25 |
| A/swine/THA/CU21304/2018 | rH1N1 (pdm + 1) | Apr-18 | Swine | 10 weeks | MT377942-49 |
| A/swine/THA/CU21626/2018 | rH1N1 (pdm + 1) | Jun-18 | Swine | 6 weeks | MT377950-57 |
| A/swine/THA/CU21630/2018 | rH1N1 (pdm + 1) | Jun18 | Swine | 8 weeks | MT377958-65 |
| A/swine/THA/CU21970/2018 | rH1N1 (pdm + 1) | Jul-18 | Swine | 6 weeks | MT377966-73 |
| A/swine/THA/CU22117/2018 | rH1N1 (pdm + 1) | Aug-18 | Swine | 4 weeks | MT377974-81 |
| A/swine/THA/CU22300/2018 | rH1N1 (pdm + 1) | Sep-18 | Swine | 10 weeks | MT377982-89 |
| A/swine/THA/CU22351/2018 | rH1N1 (pdm + 1) | Oct-18 | Swine | 9 weeks | MT377998-05 |
| A/swine/THA/CU22630/2018 | rH1N1 (pdm + 1) | Nov-18 | Swine | 4 weeks | MT378006-13 |
| S-IAV-H3N2 | |||||
| A/swine/THA/CU3794/2017 | rH3N2 (pdm + 2) | Jun-17 | Swine | 4 weeks | MT378102-09 |
| A/swine/THA/CU3816/2017 | rH3N2 (pdm + 2) | Jun-17 | Swine | 10 weeks | MT378070-77 |
| A/swine/THA/CU3790/2017 | rH3N2 (pdm + 2) | Jun-17 | Swine | 4 weeks | MT378054-61 |
| A/swine/THA/CU20218/2018 | rH3N2 (pdm + 2) | Nov-17 | Swine | 8 weeks | MT377926-33 |
| A/swine/THA/CU20226/2018 | rH3N2 (pdm + 2) | Nov-17 | Swine | 12 weeks | MT377934-41 |
| A/swine/THA/CU22337/2018 | rH3N2 (pdm + 2) | Oct-18 | Swine | 6 weeks | MT377990-97 |
arH1N1 (pdm + 1): reassorted S-IAV-H1N1 genotype contained HA gene from classical swine lineage (CS) and other genes from pandemicH1N1-2009 lineage (pdm09). rH1N1 (pdm + 2): reassorted S-IAV-H1N1 genotype contained HA gene from classical swine lineage (CS), NA gene from Eurasian avian-like lineage (EA) and internal genes from pandemicH1N1-2009 lineage (pdm09). rH3N2 (pdm + 2): reassorted S-IAV-H3N2 genotype contained HA and NA genes from human-like swine and internal genes from pandemicH1N1-2009 lineage (pdm09).