Table 2.
Plasmids that were circularised from hybrid short and long read sequencing with their Incompatibility type, associated AMR genes, size and number of isolates that shared > 99% similarity with the circularised plasmids.
| Plasmid ID | Year host E. coli was isolated | Plasmid Inc-type | Associated AMR genes | Size (kb) | No. of isolates from all years with > 99% identity |
|---|---|---|---|---|---|
| pPE13096 | 2013 | I1 | aadA5, blaCTX-M-1, sul2, dfrA17 | 110 | 42 |
| pPO125 | 2015 | Y | blaCTX-M-15, dfrA14, qnrS1, strA, strB, sul2, blaTEM-1b, tetA | 98 | 5 |
| pPO189_X1 | 2015 | X1 | dfrA14, lnuF, sul3, blaTEM-1b, tetA | 33 | 3 |
| pPO189_F | F | dfrA8, blaTEM-1b, strA, strB, sul2 | 74 | 5 | |
| pESBL138 | 2015 | I1 | blaCTX-M-1, sul2, tetA | 108 | 131 |
| p3682_I1 | 2017 | I1 | blaCMY-2 | 91 | 1 |
| p3682_FQ | F/Q | ant3-Ia, catA1, dfrA1, mphB, blaTEM-1b, tetA, strA, strB, sul2, sul3 | 169 | 1 | |
| pPO116 | 2017 | X3 | blaSHV-12, qnrS1 | 42 | 11 |