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. 2020 Sep 3;2(3):lqaa063. doi: 10.1093/nargab/lqaa063

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© The Author(s) 2019. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — Comparative analysis of the CasCollect and complete assembly pipelines for metagenomic datasets. (A) Schematic of the four steps for the CasCollect and complete assembly pipelines: files (blue) for trimming and stripping qualities; seed (orange) for the seed generation, expansion and reassigning qualities; assembly (gray) for contig building; and annotate (yellow) for detecting cas genes and CRISPR arrays to generate a GFF3 output file. (B) Timings for each pipeline for each metagenome and steps. (C) Percentage breakdown for time required for each step. (D) Number of contigs generated by each pipeline with (E) the length distribution for CasCollect and complete assembly. Colors for each step in (A) are used for the charts in (B) and (C).