Table 3.
The ten most over- and under-represented six-mers in the raw read datasets compared to the reference
| ONT | PacBio | |||
|---|---|---|---|---|
| 6-mer | difference in rate | 6-mer | difference in rate | |
| over-represented | TTTTTT | 0.0573 | TTTTTT | 0.1699 |
| AAAAAA | 0.0260 | AAAAAA | 0.0977 | |
| GCACGG | 0.0224 | GTTTTT | 0.0575 | |
| CGGGCG | 0.0221 | TTTTTG | 0.0439 | |
| CGGCGG | 0.0186 | GGGGGG | 0.0432 | |
| CACGGC | 0.0174 | CCCCCC | 0.0341 | |
| CAGCGG | 0.0169 | TTTTTC | 0.0335 | |
| GGGCGG | 0.0166 | TTTTGG | 0.0323 | |
| CGGTGG | 0.0164 | TGTTTT | 0.0315 | |
| CCGGGC | 0.0164 | GGTTTT | 0.0309 | |
| under-represented | GCCTGG | −0.0347 | CGCCAG | −0.0418 |
| CCTGGC | −0.0345 | CCAGCG | −0.0346 | |
| CAAAAA | −0.0311 | GCCAGC | −0.0334 | |
| AAAAAG | −0.0292 | CCAGCA | −0.0305 | |
| AAAAAT | −0.0282 | CACCAG | −0.0278 | |
| GAAAAA | −0.0260 | CCGCCA | −0.0272 | |
| CCAGGC | −0.0258 | TGCCAG | −0.0263 | |
| ACCTGG | −0.0257 | TCGCCA | −0.0263 | |
| TAAAAA | −0.0252 | ACCAGC | −0.0263 | |
| GCCAGG | −0.0250 | ATCGCC | −0.0261 | |