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. 2020 Sep 3;2(3):lqaa068. doi: 10.1093/nargab/lqaa068

Table 1.

Percentages of mapped read bases with or without read trimming prior to mapping

Method UHRR (%) HBRR (%)
No trimming + Subread 86.4 85.5
Trimmomatic–adapters and SW + Subread 82.4 81.7
Trimmomatic–adapters and MI + Subread 83.2 82.3
TrimGalore + Subread 85.1 84.2

Subread was used for mapping of untrimmed or trimmed reads.