Table 3.
Summary of all CO products detected by TSETA
| Chromosome number | Chromosome Length (bp) | Position (bp) | GC tract length (bp) | GC tract marker | snp_start_out | snp_start_in | snp_end_in | snp_end_out | Type |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 6835803 | 290545 | 313 | 5 | 290360 | 290417 | 290660 | 290742 | CO(NCO) |
| 1 | 6835803 | 1376407 | 278 | 5 | 1376220 | 1376316 | 1376462 | 1376630 | CO(NCO) |
| 1 | 6835803 | 2846616 | 192 | 0 | 2846520 | 2846520 | 2846712 | 2846712 | CO |
| 1 | 6835803 | 4850122 | 164 | 0 | 4850040 | 4850040 | 4850204 | 4850204 | CO |
| 1 | 6835803 | 5942633 | 45 | 1 | 5942600 | 5942621 | 5942621 | 5942690 | CO(NCO) |
| 2 | 6234656 | 1078315 | 265 | 5 | 1078135 | 1078229 | 1078313 | 1078581 | CO(NCO) |
| 2 | 6234656 | 3067878 | 287 | 6 | 3067677 | 3067793 | 3067982 | 3068061 | CO(NCO) |
| 2 | 6234656 | 4581277 | 273 | 0 | 4581140 | 4581140 | 4581413 | 4581413 | CO |
| 3 | 5311445 | 389221 | 78 | 1 | 389129 | 389234 | 389234 | 389285 | CO(NCO) |
| 3 | 5311445 | 1639304 | 149 | 1 | 1639199 | 1639259 | 1639259 | 1639497 | CO(NCO) |
| 3 | 5311445 | 2230879 | 438 | 0 | 2230660 | 2230660 | 2231098 | 2231098 | CO |
| 4 | 4556834 | 823739 | 75 | 0 | 823701 | 823701 | 823776 | 823776 | CO |
| 4 | 4556834 | 1922011 | 290 | 6 | 1921803 | 1921929 | 1922088 | 1922223 | CO(NCO) |
| 4 | 4556834 | 3937471 | 185 | 1 | 3937229 | 3937528 | 3937528 | 3937598 | CO(NCO) |
| 5 | 4159965 | 906317 | 84 | 1 | 906203 | 906347 | 906347 | 906371 | CO(NCO) |
| 5 | 4159965 | 1651362 | 137 | 2 | 1651260 | 1651328 | 1651378 | 1651483 | CO(NCO) |
| 5 | 4159965 | 2640861 | 176 | 1 | 2640737 | 2640809 | 2640809 | 2641088 | CO(NCO) |
| 5 | 4159965 | 3965025 | 349 | 0 | 3964850 | 3964850 | 3965199 | 3965199 | CO |
| 6 | 4000387 | 640821 | 312 | 6 | 640643 | 640688 | 640864 | 641090 | CO(NCO) |
| 6 | 4000387 | 2245856 | 476 | 0 | 2245618 | 2245618 | 2246094 | 2246094 | CO |
| 6 | 4000387 | 3266023 | 167 | 1 | 3265860 | 3266018 | 3266018 | 3266194 | CO(NCO) |
| 7 | 3823438 | 1180772 | 373 | 0 | 1180585 | 1180585 | 1180958 | 1180958 | CO |
| 7 | 3823438 | 2891266 | 661 | 6 | 2890900 | 2890971 | 2891551 | 2891642 | CO(NCO) |
| 7 | 3823438 | 3411537 | 251 | 15 | 3411387 | 3411435 | 3411632 | 3411692 | CO(NCO) |