Table 2.
Graph complexity metrics of the genome graphs output by MinYS for individual (top) and pooled (bottom) samples with several reference genomes used as a guide
| Reference genome | |||||
|---|---|---|---|---|---|
| Closest | Incomplete | Distant | Most distant | Average | |
| Individual samples | |||||
| Assembly in a single connected component | 93.75% | 93.75% | 96.88% | 87.50% | 92.97% |
| Assembly in a single path (before comparison) | 71.88% | 71.88% | 81.25% | 81.25% | 76.57% |
| Assembly in a single path (after comparison) | 96.88% | 96.88% | 96.88% | 93.75% | 96.10% |
| Pooled samples | |||||
| Assembly in a single connected component | 100.00% | 100.00% | 100.00% | 88.89% | 97.22% |
| Assembly in a single path (before comparison) | 11.11% | 5.56% | 5.56% | 0.00% | 5.56% |
| Assembly in a single path (after comparison) | 55.56% | 61.11% | 88.89% | 27.78% | 58.34% |
Values indicate the percentage of samples with the given graph characteristics.