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. 2019 Oct 30;2(1):lqz013. doi: 10.1093/nargab/lqz013

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© The Author(s) 2019. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — Spaced-word match W with respect to a pattern P = 1101001 of weight = 4. W can be seen as a gap-free pairwise alignment that has the same length as P, with matching nucleotide at the four ‘match positions’ and possible mismatches at the three ‘don’t-care’ positions.

Inline graphic — Spaced-word match W with respect to a pattern P = 1101001 of weight = 4. W can be seen as a gap-free pairwise alignment that has the same length as P, with matching nucleotide at the four ‘match positions’ and possible mismatches at the three ‘don’t-care’ positions.