Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2020 Aug 6;2(3):lqaa054. doi: 10.1093/nargab/lqaa054

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2019. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Figure 2. — Benchmarking six liftover tools from hg19 to hg38. (A) Percentage of the number of intervals and length of ungapped, gapped-in-hg19, gapped-in-both and gapped-in-hg38 on the hg19 assembly. (B) Percentage of lifted, unlifted and lifted to the corresponding block by regions. (C) Comparing the length of intervals before and after conversion by regions. (D) Mean of width difference by regions. (E) Summary of the underlying principle of liftover for each region. (F) Liftover 250 000 CpGs using six tools. (G) Liftover all CpGs using five tools (exclude NCBI remap). (H) Liftover a ChIP-Seq sample using six tools.