Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2020 Aug 6;2(3):lqaa054. doi: 10.1093/nargab/lqaa054

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2019. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Figure 3. — UCSC liftOver conversion of WGBS data. (A) Steps of analysis to determine if CpG sites are mapped to the correct location. (B) Distribution of delta values by subtracting distance between initial CpGs and gene coordinates on hg19 (d1) by distance between lifted CpGs and gene coordinates on hg38 (d2). (C) UCSC liftOver conversion of the full CpG dataset and details of removed data. (D) UCSC liftOver conversion of 43 WGBS samples and details of removed data. (E) Enrichment analysis of CpG duplication. (F) Enrichment analysis of CpG alternative chromosome. (G) Enrichment analysis of not CG. (H) Distribution of Jaccard statistic values of corresponding CpG coordinates between liftover and alignment methylomes among 43 WGBS samples.