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. 2020 Aug 6;2(3):lqaa054. doi: 10.1093/nargab/lqaa054

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© The Author(s) 2019. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 8. — Concordance between liftover and alignment outputs of ChIP-Seq samples using segment_liftover and UCSC liftOver (***P< 0.001). (A) Box plot showing Jaccard statistic of similarity between the two outputs using segment_liftover and UCSC liftOver. (B) Box plot showing Pearson correlation coefficients of intervals length between the two outputs using segment_liftover and UCSC liftOver. (C) Corrupted positions of sample ESR1 were converted by UCSC liftOver. (D) Corrupted positions of sample ESR1 were filtered by segment_liftover. (E) Liftover of sequence, a general example. (F) Liftover of sequence, a corrupted example. (G) Percentage of base pair of contigs unchanged/changed of strand from hg19 to hg38.