Table 1.
Description of analyzed datasets
| Datasets | No. of cells | No. of genes used | No. of cell types | Group size (min, max) | Technology (reads/cell) |
|---|---|---|---|---|---|
| Brain 1.3m | 1 300 774 | 23 909 | - | - | 10× V2 (18 500) |
| Mouse brain | 160 796 | 20 803 | 7 | (1826, 74 539) | 10× V1 |
| PBMC 68k | 68 579 | 20 387 | 10 | (176, 21 429) | 10× V1 (20 000) |
| PBMC 4k | 4271 | 16 653 | 8 | (135, 1292) | 10× V2 (87 000) |
| Mouse bladder | 2746 | 19 771 | 16 | (13, 717) | Microwell-seq |
| Mouse retina | 27 499 | 13 166 | 19 | (48, 10 888) | Drop-seq (8200) |
| Mouse ES | 2717 | 24 047 | 4 | (303, 933) | Droplet-based |
| Worm neuron | 4186 | 13 488 | 10 | (70, 1015) | sci-RNA-seq |
| Jurkat 293T cells | 1580 | 1000 | 2 | (40, 1540) | 10× |
| MGH107 (WHO II) | 252 | 23 686 | 3 | (4, 98) | Smart-seq2 |
| Simulation datasets | 5000 | 10 000 | 10 | Approx. (68, 1099) |