Table 2.

True FDRs when controlling empirical FDRs at 0.2, 0.1, 0.05 and 0.01 for the simulation setting with α = 3, β = 0.18 and fold change as 1.3 for true positive genes

FDR	Foldseq	2Group	t-test	voom	DESeq2	edgeR
0.2	0.020	0.228	0.000	0.532	0.030	0.065
0.1	0.010	0.176	0.000	0.431	0.010	0.050
0.05	0.010	0.150	0.000	0.345	0.010	0.030
0.01	0.000	0.126	0.000	0.000	0.010	0.020