Table 3. Normalized phylogenetic features of potential super-spreader candidate phylogenies in Spanish COVID-19 outbreak.
| HG | AL | n | n1 | n2 | AL | CH | CI | IL | MH | PF | SI | SN1 | SN2 | H | L | H/L |
| Analysis was carried out in indicated haplogroups after subtracting corresponding nested sub-clades. n: Total sample size; n1: sample size of principal node (only for super-spreader candidate); n2: sample size of derived haplotypes (only for super-spreader candidate). For Spanish regions: BN: Barcelona (Catalonia); DN: Donostia (Basque Country); GL: Galicia; MD: Madrid; NV: Navarra; VL: Valencian Community; VT: Vitoria (Basque Country); Statistical indices: AL: Normalized average ladder; CH: Cherries; CI: Colless index; IL: IL number; MH: Maximum height; PF: Pitchforks; SC: Sackin index; SN1 and SN2: Staircase-ness 1 and 2, respectively. H: Average of AL, CI, IL, MH, and SI, SN1; L: Average of CH, PF, and SN2. | ||||||||||||||||
| A2a4 | VL | 14 | 7 | 7 | 1.00 | 0.14 | 1.00 | 1.00 | 1.00 | 0.21 | 1.00 | 0.92 | 0.24 | 0.99 | 0.20 | 4.92 |
| A2a4 | DN | 9 | 0 | 9 | 0.43 | 0.44 | 0.71 | 0.71 | 0.75 | 0.67 | 0.91 | 0.63 | 0.55 | 0.69 | 0.56 | 1.24 |
| A2a5 | VL | 32 | 15 | 17 | 1.00 | 0.06 | 1.00 | 1.00 | 1.00 | 0.09 | 1.00 | 0.97 | 0.13 | 0.99 | 0.10 | 10.43 |
| A2a5 | MD | 39 | 13 | 26 | 1.00 | 0.05 | 1.00 | 1.00 | 1.00 | 0.08 | 1.00 | 0.97 | 0.11 | 1.00 | 0.08 | 12.47 |
| A2a5 | DN | 17 | 9 | 8 | 0.43 | 0.24 | 0.90 | 0.87 | 0.94 | 0.18 | 0.93 | 0.88 | 0.27 | 0.82 | 0.23 | 3.61 |
| A2a5 | BC | 14 | 7 | 7 | 1.00 | 0.14 | 1.00 | 1.00 | 1.00 | 0.21 | 1.00 | 0.92 | 0.24 | 0.99 | 0.20 | 4.92 |
| A2a5 | GL | 19 | 8 | 11 | 0.88 | 0.21 | 0.88 | 0.88 | 0.94 | 0.16 | 0.92 | 0.89 | 0.25 | 0.90 | 0.21 | 4.36 |
| A2a5 | NV | 9 | 5 | 4 | 0.57 | 0.44 | 0.75 | 0.71 | 0.88 | 0.33 | 0.89 | 0.75 | 0.47 | 0.76 | 0.42 | 1.83 |
| A2a5c | MD | 29 | 13 | 16 | 1.00 | 0.07 | 1.00 | 1.00 | 1.00 | 0.10 | 1.00 | 0.96 | 0.14 | 0.99 | 0.10 | 9.54 |
| A2a5c | VL | 28 | 13 | 15 | 1.00 | 0.07 | 1.00 | 1.00 | 1.00 | 0.11 | 1.00 | 0.96 | 0.14 | 0.99 | 0.11 | 9.24 |
| A2a5c | BN | 9 | 2 | 7 | 1.00 | 0.22 | 1.00 | 1.00 | 1.00 | 0.33 | 1.00 | 0.88 | 0.34 | 0.98 | 0.30 | 3.28 |
| A2a10 | VL | 18 | 15 | 3 | 1.00 | 0.11 | 1.00 | 1.00 | 1.00 | 0.17 | 1.00 | 0.94 | 0.20 | 0.99 | 0.16 | 6.20 |
| B3a | VT | 117 | 73 | 44 | 0.18 | 0.12 | 0.91 | 0.90 | 0.94 | 0.05 | 0.92 | 0.94 | 0.10 | 0.80 | 0.09 | 8.75 |
| B3a | VL | 43 | 29 | 14 | 0.29 | 0.14 | 0.81 | 0.90 | 0.88 | 0.21 | 0.84 | 0.93 | 0.18 | 0.78 | 0.18 | 4.38 |
| B9 | DN | 6 | 5 | 1 | 1.00 | 0.29 | 1.00 | 1.00 | 1.00 | 0.43 | 1.00 | 0.83 | 0.41 | 0.97 | 0.37 | 2.60 |
| B9 | VL | 7 | 4 | 3 | 1.00 | 0.29 | 1.00 | 1.00 | 1.00 | 0.43 | 1.00 | 0.83 | 0.41 | 0.97 | 0.37 | 2.60 |
| B9 | MD | 10 | 0 | 10 | 0.33 | 0.55 | 0.76 | 0.56 | 0.80 | 0.27 | 0.89 | 0.70 | 0.50 | 0.67 | 0.44 | 1.53 |