TABLE 2.
Comparison of RT-qLAMP and RT-q(PCR-LAMP) assays.
SARS-CoV-2 RNA copies per reaction | 5000 | 500 | 50 | 5 | NTC |
Tq (min) of qLAMP | 27.51 ± 0.24 | 31.47 ± 3.72 | NA | NA | NA |
Tq (min) of q(PCR-LAMP); 1 cycle of PCR | 21.30 ± 0.98 | 23.44 ± 4.27 | 28.44 ± 5.03 | 30.40 ± 3.39 | NA |
Tq (min) of q(PCR-LAMP); 2 cycles of PCR | 19.88 ± 0.85 | 21.69 ± 1.72 | 25.83 ± 5.44 | 26.86 ± 6.17 | NA |
Tq (min) of q(PCR-LAMP); 4 cycles of PCR | 18.10 ± 0.29 | 20.70 ± 0.89 | 23.31 ± 4.18 | 26.24 ± 5.06 | NA |
Tq (min) of q(PCR-LAMP); 6 cycles of PCR | 15.56 ± 0.90 | 19.54 ± 0.67 | 20.81 ± 0.76 | 22.23 ± 0.93 | NA |
SARS-CoV-2 RNA was detected by RT-qLAMP and RT-q(PCR-LAMP) assays. The q(PCR-LAMP) amplifications were performed with 1, 2, 4, and 6 cycles of PCR. The table lists the mean quantification times (Tq) ± standard deviation of three replicates of the qLAMP and q(PCR-LAMP) reactions for the indicated RNA copy numbers. The assays were carried out with Reverase reverse-transcriptase and SD DNA polymerase using a series of SARS-CoV-2 RNA 10-fold dilutions from 5000 to 5 copies per reaction (NTC, no template control).