Table 2.

SSR markers for foreground selection

Gene or QTL	Chr	Marker	Genetic or physical distance between marker and gene	Primers	Position of Marker on Chr (bp) (https://rapdb.dna.affrc.go.jp/)	Tm (ºC)
OsHMA3	7	RM21268	119.932 kb (Ueno et al. 2010)	F: gcaaactagcaagtagcaagaacg R: gagtgcctgtgtgtataggatacg	7,529,485–7,529,590	55
qlGCd3	3	RM16153	< 3.5 Mb (Abe et al. 2013)	F: tggttgtggtatagcacggtaagc R: tgacccaaggagatactaggttgc	35,020,665–35,020,929	55
Pi49	11	RM224	about 6 cM (Sun et al. 2012)	F: atcgatcgatcttcacgagg R: tgctataaaaggcattcggg	27,673,251–27,673,372	55
Pi48	12	LY2	about 0.025 cM (Liu et al. 2012)	F: attacgctcgatagtggc R: ctagcgggaggttggaag	11,935,927–11,936,129	55