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. 2020 Nov 18;9(11):giaa127. doi: 10.1093/gigascience/giaa127

Figure 2.

Figure 2

Comparison of GigaSOM.jl results with manual gating of the Levine32 dataset. The confusion matrix is normalized in rows, showing the ratio of cells in each aggregate of GigaSOM-originating clusters that matches the cell types from manual analysis. Darker color represents better match. The mean F1 score is comparable to FlowSOM. A more comprehensive comparison is available in Supplementary Fig. S1.