ALFY	Autophagy-linked FYVE protein
AMBRA1	Activating molecule in BECN1-regulated autophagy protein 1
AMPK	Adenosine monophosphate-activated protein kinase
ARSB	Arylsulfatase B
ATG10	Autophagy-related protein 10
ATG101	Autophagy-related protein 101
ATG12	Autophagy-related protein 12
ATG13	Autophagy-related protein 13
ATG14	Autophagy-related protein 14
ATG16L1	Autophagy-related protein 16 like 1
ATG2A	Autophagy-related protein 2 homolog A
ATG2B	Autophagy-related protein 2 homolog B
ATG4A	Autophagy related 4A cysteine peptidase
ATG4B	Autophagy related 4B cysteine peptidase
ATG4C	Autophagy related 4C cysteine peptidase
ATG4D	Autophagy related 4D cysteine peptidase
ATG5	Autophagy-related protein 5
ATG7	Autophagy-related protein 7
ATG9A	Autophagy-related protein 9A
ATG9B	Autophagy-related protein 9B
ATGL	Adipose triglyceride lipase
ATL3	Atlastin-3
Barkor	Beclin 1-associated autophagy-related key regulator
BCL-2	Apoptosis regulator Bcl-2
BECN1	Beclin-1
BIRC6	Baculoviral IAP repeat-containing protein 6
BNIP3	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3
BNIP3L	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like
CCPG1	Cell cycle progression protein 1
CHMP2B	Charged multivesicular body protein 2b
CHMP4B	Charged multivesicular body protein 4b
CTNS	Cystinosin
CTSD	Cathepsin D
CTSF	Cathepsin F
DFCP1	Double FYVE-containing protein 1
DNAJC5	DnaJ homolog subfamily C member 5
EPG5	Ectopic P granules protein 5 homolog
FAM134B	Family With Sequence Similarity 134, Member B
FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8
FUCA1	Tissue alpha-L-fucosidase
FUNDC1	FUN14 domain-containing protein 1
FYCO1	FYVE and coiled-coil domain-containing protein 1
GAA	Lysosomal alpha-glucosidase
GABARAP	Gamma-aminobutyric acid receptor-associated protein
GABARAPL1	Gamma-aminobutyric acid receptor-associated protein-like 1
GALNS	N-acetylgalactosamine-6-sulfatase
GARARAPL2	Gamma-aminobutyric acid receptor-associated protein-like 2
GLB1	Beta-galactosidase
GNS	N-acetylglucosamine-6-sulfatase
GRASP55	Golgi reassembly-stacking protein of 55 kDa
GRN	Progranulin
GUSB	Beta-glucuronidase
HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate
HGSNAT	Heparan-alpha-glucosaminide N-acetyltransferase
HOPS	Hepatocyte odd Ppotein shuttling protein
HSC70	Heat shock cognate 71 kDa protein
HSL	Hormone-sensitive lipase
HTT	Huntingtin
HYAL1	Hyaluronidase-1
IDS	Iduronate 2-sulfatase
IDUA	Alpha-L-iduronidase
KIF5B	Kinesin-1 heavy chain
LAMP2	Lysosome-associated membrane protein 2
MAN2B1	Lysosomal alpha-mannosidase
MANBA	Beta-mannosidase
MAP1-LC3A	Microtubule-associated proteins 1A/1B light chain 3A
MAP1-LC3B	Microtubule-associated proteins 1A/1B light chain 3B
MAP1-LC3C	Microtubule-associated proteins 1A/1B light chain 3C
MFSD8	Major facilitator superfamily domain-containing protein 8
mTOR	Mechanistic/mammalian target of rapamycin
NAGLU	Alpha-N-acetylglucosaminidase
NBR1	Next to BRCA1 gene 1 protein
NCOA4	Nuclear receptor coactivator 4
NDP52	Nuclear domain 10 protein 52
NPC1	NPC intracellular cholesterol transporter 1
NPC2	NPC intracellular cholesterol transporter 2
NUFIP1	Nuclear fragile X mental retardation-interacting protein 1
OPTN	Optineurin
PI3KC3	Phosphatidylinositol 3-kinase catalytic subunit type 3
PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4
PLEKHM1	Pleckstrin homology domain-containing family M member 1
RB1CC1	RB1-inducible coiled-coil protein 1
RTN3	Reticulon-3
SEC62	Translocation protein SEC62
SGSH	N-sulphoglucosamine sulphohydrolase
SLC17A5	Sialin
SNAP29	Synaptosomal-associated protein 29
SQSTM1	Sequestosome-1
STK36	Serine/threonine-protein kinase 36
STX17	Syntaxin-17
TAX1BP1	Tax1-binding protein 1
TEX264	Testis-expressed protein 264
TOLLIP	Toll-interacting protein
ULK1	Unc-51 like autophagy activating kinase
UVRAG	UV radiation resistance-associated gene protein
VAMP7	Vesicle-associated membrane protein 7
VAMP8	Vesicle-associated membrane protein 8
VPS4B	Vacuolar protein sorting-associated protein 4B
WIPI1	WD repeat domain phosphoinositide-interacting protein 1
WIPI2	WD repeat domain phosphoinositide-interacting protein 2
WIPI3	WD repeat domain phosphoinositide-interacting protein 3
WIPI4	WD repeat domain phosphoinositide-interacting protein 4
YKT6	Synaptobrevin homolog YKT6