. 2020 Nov 18;17(3):345–358. doi: 10.1007/s10393-020-01499-4

Table 3.

Summary of Virus Detected by Species, Specimen Type, and Settlement Site

Virus family, virus (# of animal species, season sampled)	No. of positive / No. of tested specimens			Settlement sites (urban or peri-urban)
Virus family, virus (# of animal species, season sampled)	No. of oral swabs tested	No. of rectal swabs tested	Total specimens tested^a	Settlement sites (urban or peri-urban)
Hantavirus
Thottapalayam virus^c (1 Suncus murinus, dry season)	0.24% (1/410)	0% (0/154)	0.18% (1/560)	Site-1 (peri-urban)^b
Coronavirus
Murine coronavirus^d (2 Mus musculus, dry season)	0.49% (2/410)	0% (0/154)	0.36% (2/560)	Site-4 (urban) & Site-1 (peri-urban)^b
Paramyxovirus
PREDICT_PMV-54^e (6 Suncus murinus, dry & monsoon season)	0.24% (1/410)	3.90% (6/154)	1.25% (7/560)	Site-1 (peri-urban)^b & Site-3 (urban) sites^b
PREDICT_PMV-55^f (1 Rattus tanezumi, dry season)	0.24% (1/410)	0.00% (0/154)	0.18% (1/560)	Site-1 (peri-urban)^b
Rhabdovirus
PREDICT_RbdV-5 ^g (2 Suncus murinus, monsoon season)	0.24% (1/410)	0.65% (1/154)	0.36% (2/560)	Site-1 (peri-urban)^b
PREDICT_RbdV-6 ^h (1 Suncus murinus, dry season)	0.24% (1/410)	0.00% (0/154)	0.18% (1/560)	Site-2 (urban)
Total	1.46% (6/410)	4.55% (7/154)	2.32% (13/560)

^aAll virus findings were from adult animals (n = 13) and no animals tested positive for more than one virus

^bRectal swabs or feces were tested from these sites only

^cGenBank accession number KX442774

^dGenBank accession number KX285432 & KX285433

^eGenBank accession number KP963851-57; PREDICT_PMV-54 virus was detected in both oral and rectal swabs from one animal (Suncus murinus)

^fGenBank accession KP963858

^gGenBank accession MG956834 & MG956836

^hGenBank accession MG956835