Table 6.

Full simulation results using the unpenalized refit θ.

			Relative θ error (SE)			Kendall’s tau (SE)
			2,3-mer	3-mer	3-mer per-target	2,3-mer	3-mer	3-mer per-target
% effect size	% nonzeros	# samples
50	25	100	0.725 (0.156)	0.836 (0.205)	1.027 (0.197)	0.573 (0.061)	0.504 (0.061)	0.393 (0.040)
		200	0.474 (0.068)	0.558 (0.098)	0.846 (0.062)	0.709 (0.018)	0.575 (0.063)	0.477 (0.057)
		400	0.380 (0.091)	0.377 (0.110)	0.656 (0.052)	0.777 (0.030)	0.612 (0.036)	0.564 (0.035)
	50	100	0.682 (0.140)	0.697 (0.103)	1.017 (0.106)	0.625 (0.042)	0.606 (0.056)	0.433 (0.033)
		200	0.562 (0.196)	0.572 (0.153)	0.880 (0.089)	0.712 (0.044)	0.670 (0.046)	0.528 (0.035)
		400	0.393 (0.175)	0.435 (0.081)	0.679 (0.026)	0.805 (0.026)	0.720 (0.041)	0.647 (0.029)
	100	100	0.710 (0.208)	0.840 (0.194)	1.217 (0.236)	0.614 (0.065)	0.624 (0.023)	0.458 (0.041)
		200	0.547 (0.100)	0.603 (0.088)	0.880 (0.097)	0.708 (0.026)	0.708 (0.026)	0.552 (0.045)
		400	0.370 (0.047)	0.468 (0.057)	0.718 (0.080)	0.777 (0.028)	0.769 (0.017)	0.648 (0.021)
100	25	100	0.443 (0.143)	0.424 (0.119)	0.680 (0.067)	0.725 (0.059)	0.614 (0.047)	0.535 (0.051)
		200	0.331 (0.089)	0.316 (0.091)	0.565 (0.053)	0.777 (0.029)	0.650 (0.078)	0.625 (0.036)
		400	0.246 (0.046)	0.245 (0.092)	0.406 (0.044)	0.807 (0.021)	0.649 (0.025)	0.704 (0.025)
	50	100	0.519 (0.148)	0.539 (0.106)	0.820 (0.115)	0.752 (0.033)	0.695 (0.050)	0.567 (0.039)
		200	0.355 (0.090)	0.369 (0.073)	0.658 (0.051)	0.812 (0.028)	0.745 (0.039)	0.658 (0.035)
		400	0.248 (0.049)	0.275 (0.060)	0.496 (0.046)	0.860 (0.020)	0.779 (0.032)	0.743 (0.026)
	100	100	0.496 (0.063)	0.631 (0.101)	0.852 (0.062)	0.712 (0.033)	0.742 (0.027)	0.568 (0.034)
		200	0.373 (0.057)	0.429 (0.062)	0.649 (0.061)	0.783 (0.026)	0.805 (0.031)	0.692 (0.026)
		400	0.270 (0.031)	0.318 (0.064)	0.483 (0.035)	0.842 (0.017)	0.864 (0.020)	0.770 (0.017)
200	25	100	0.483 (0.124)	0.499 (0.069)	0.639 (0.050)	0.689 (0.025)	0.610 (0.030)	0.559 (0.049)
		200	0.357 (0.047)	0.389 (0.046)	0.534 (0.034)	0.737 (0.043)	0.637 (0.037)	0.619 (0.042)
		400	0.272 (0.033)	0.304 (0.024)	0.467 (0.035)	0.792 (0.024)	0.708 (0.055)	0.690 (0.022)
	50	100	0.420 (0.065)	0.494 (0.044)	0.633 (0.033)	0.755 (0.029)	0.648 (0.044)	0.594 (0.029)
		200	0.317 (0.042)	0.411 (0.046)	0.555 (0.036)	0.811 (0.025)	0.695 (0.034)	0.667 (0.028)
		400	0.257 (0.028)	0.316 (0.021)	0.501 (0.043)	0.857 (0.017)	0.760 (0.029)	0.714 (0.029)
	100	100	0.459 (0.039)	0.532 (0.056)	0.684 (0.081)	0.680 (0.038)	0.747 (0.025)	0.618 (0.024)
		200	0.378 (0.053)	0.388 (0.035)	0.533 (0.041)	0.741 (0.040)	0.808 (0.020)	0.716 (0.017)
		400	0.312 (0.029)	0.323 (0.033)	0.454 (0.030)	0.800 (0.033)	0.852 (0.016)	0.771 (0.013)