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. 2020 Nov 18;11:5875. doi: 10.1038/s41467-020-19681-1

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© The Author(s) 2020, corrected publication 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — a The landscape of genome assembly (~502 Mb) and annotation of S. tora. Tracks (from outside) correspond to chromosomes (Chr01–Chr13 on a Mb scale), gene density, repeat density, rRNA density, tRNA density, GC content, and GC skew. Tracks are drawn in nonoverlapping 100-kb sliding windows. The red bars in the rRNA and tRNA tracks represent the maximum density of copies on the scale. b An overview of orthologous and paralogous genes among S. tora, related legumes, and V. vinifera. “Uncertain” indicates homologous genes obtained from BLAST but not found using OrthoMCL. “Species-specific” genes do not have any similarity to genes in the other species based on BLAST and OrthoMCL. c Significantly enriched biological process GO and KEGG categories (specialized metabolism) of expanded gene families in S. tora. d Lineage-specific expansion of the CHS-L gene family in S. tora and four other legumes. The 15 tandemly duplicated gene clusters are ordered and shown on chromosome 7, as well as one gene on chromosome 2.