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. 2020 Sep 3;61(6):819–827. doi: 10.1093/jrr/rraa069

Table 2.

Sequence analysis of HPRT point mutants. The mutated position in the exon ±2 bp is indicated and numbered according to its cDNA position. Affected bases and the 5′ and 3′ four bases flanking each side are shown

Cells IR dose Mutant Position of mutation Target sequencea 5′ to 3′ Type of mutation Amino acid change
HepG2 0 Gy H 8–2, H 8–3, H 8–5 c.143 GAAC G TCTT GC > TA 48 R > H
H 8–1 c.551 AATT C CAGA GC > TA 184 P > Q
H 2–3, H2–6 c.610–1 tata g CATG GC > AT
H8–6 c.623 GTCA T TAGT AT > CG 208 I > S
H 5–1 None
2 Gy H2 5–9 c.114 TTCC T CATG AT > GC
c.542 GGAT T TGAA AT > TA 181 Y > F
c.612 agCA T GTTT AT > GC
H2 7–8 c.220 TAAA T TCTT AT > GC 74 F > L
c.346 AAAA G TAAT GC > AT 116 V > I
c.385–1 tcta g AATG GC > TA
H2 7–9 c.302 ATCA G ACTG GC > AT 101 R > K
H2 6–20 c.402 + 1 GGAA g TAAT GC > TA
H2 5–15 c.532 + 2 ACTg t aagt AT > TA
H2 5–17 None
Mock 0 Gy C 8–1, C 8–2, C 8–6, C 8–7 c.238 GCTG G ATTA GC > TA 80 D > Y
C 3–27 c.580 CCTT G ACTA GC > AT 194 D > N
C 8–8 None
2 Gy C2 4–7 c.95 GATT T GGAA AT > GC 32 L > S
C2 5–15 c.532 + 2 ACTg t aagt AT > TA
C2 4–6 None
A3B 0 Gy G-3-1 c.59 CTTG A TTTA AT > TA 20 D > V
G 6–8 c.111 TTTA T TCCT AT > CG 37 I > M
G 3–8 c.319–1 acta g AATG GC > CG
G 3–18 c.319–1 acta g AATG GC > AT
c.346 AAAA G TAAT GC > AT 116 V > I
G 3–15 c.385–1 tcta g AATG GC > CG
c.543 GATT T GAAA AT > GC
G 4–3 c.403 aaag G ATAT GC > AT 135 D > N
G-3-2 c.520 TGGA T ATAA AT > CG 174 Y > D
2 Gy G2 5–35 c.165 TGAA G GAGA GC > CG 55 K > N
c.188 ATTG T AGCC AT > CG 63 V > G
G2 5–10 c.166 GAAG G AGAT GC > TA 56 E > *
G2 5–23 c.229 TGCT G ACCT GC > TA 77 D > Y
G2 4–3 c.384 + 1 AAAG g tatg GC > AT
G2 4–1 c.428 ACAA T GCAG AT > TA 143 M > K
A3B KO 0 Gy 3B 5–1 c.28–2 tttc a gATT AT > TA
2 Gy 3B2 5–2 c.385–2 ttct a gAAT AT > TA
3B2 5–28 c.402 + 1 GGAA g taag GC > CG

aIntron sequences are shown in lower case letters, whereas upper case indicates exon sequence.

*An asterisk indicates a terminal codon.