Table 2.
Top 30 eQTM Methylation Probes Identified in a Previous Epigenome-Wide Association Study (EWAS) of Atopic Asthma2
| Probe | Chr | Position | EWAS P |
Associated Genes Identified by eQTM (FDR < 0.01) | Nearest Gene |
|---|---|---|---|---|---|
| cg08844313 | 5 | 149240529 | 1.2 × 10-16 | CD74, SLC26A2, DCTN4, AFAP1L1, GRPEL2 | PDE6A |
| cg20372759 | 12 | 58162287 | 1.2 × 10-16 | MBD6, CYP27B1, AGAP2-AS1, MARCH9, TSFM, ATP23, MYO1A | METTL1 |
| cg07239613 | 16 | 67051005 | 2.3 × 10-16 | PSMB10, FBXL8, HSF4, NOL3, CMTM4, PSKH1, TRADD, CKLF | CES4A |
| cg15006973 | 1 | 35258933 | 3.2 × 10-16 | TMEM35B, GJB4, PSMB2, KIAA0319L, SFPQ, LOC653160 | GJA4 |
| cg10549071 | 2 | 235160451 | 4.0 × 10-16 | DGKD, UGT1A1, UGT1A4, UGT1A5, UGT1A3, SCARNA5 | SPP2 |
| cg00406211 | 10 | 121077022 | 5.6 × 10-16 | GRK5, FAM204A, PRDX3, MCMBP | GRK5 |
| cg00664723 | 5 | 15927184 | 5.7 × 10-16 | FBXL7 | FBXL7 |
| cg03875819 | 10 | 4386802 | 6.6 × 10-16 | AKR1C3 | LINC00704 |
| cg21158502 | 5 | 74348187 | 8.6 × 10-16 | GCNT4, LINC01336, GFM2, ENC1, NSA2, FAM169A, POC5 | ANKRD31 |
| cg13586696 | 22 | 29458723 | 1.1 × 10-15 | XBP1, KREMEN1, GAS2L1, RHBDD3 | C22orf31 |
| cg20790648 | 3 | 151619923 | 1.6 × 10-15 | GPR171, MBNL1, AADAC, P2RY13, P2RY1 | SUCNR1 |
| cg24707200 | 1 | 156833163 | 2.3 × 10-15 | SEMA4A, MEF2D, CCT3, ISG20L2, LAMTOR2, SLC25A44, RRNAD1, SMG5, UBQLN4, MRPL24 | NTRK1 |
| cg01859321 | 8 | 144970195 | 2.5 × 10-15 | MROH6, SLC52A2, SCRIB, DGAT1, ZNF707, MROH1, FBXL6,PLEC, ADCK5 | PLEC |
| cg01870976 | 15 | 101887154 | 3.2 × 10-15 | PCSK6, ALDH1A3, LRRK1, TM2D3 | PCSK6 |
| cg00285620 | 11 | 102147694 | 4.9 × 10-15 | DYNC2H1, TMEM123, MMP10 | BIRC3 |
| cg04132353 | 2 | 31440349 | 6.0 × 10-15 | CAPN14, DPY30, LBH, XDH | CAPN14 |
| cg06675531 | 5 | 150019123 | 6.4 × 10-15 | ZNF300, SLC26A2, DCTN4,SYNPO | SYNPO |
| cg22855021 | 14 | 81610812 | 7.5 × 10-15 | GTF2A1 | TSHR |
| cg09472600 | 1 | 183537770 | 9.3 × 10-15 | NPL, DHX9, TSEN15, APOBEC4 | NCF2 |
| cg19107578 | 5 | 493262 | 1.2 × 10-14 | SLC9A3, PP7080, CEP72, LOC100288152 | SLC9A3 |
| cg18749617 | 15 | 102028637 | 1.2 × 10-14 | PCSK6, ALDH1A3, LRRK1 | PCSK6 |
| cg10830021 | 11 | 3815589 | 1.3 × 10-14 | RRM1, TRIM21, TSSC2 | NUP98 |
| cg03387497 | 20 | 17680945 | 1.5 × 10-14 | POLR3F, SNRPB2, LINC00493, RRBP1, RBBP9 | BANF2 |
| cg20337028 | 17 | 75181836 | 1.8 × 10-14 | SEC14L1, SYNGR2, UBALD2, SEPT9, SPHK1, TNRC6C | SEC14L1 |
| cg17223698 | 15 | 39416631 | 2.0 × 10-14 | SRP14 | C15orf54 |
| cg19497511 | 2 | 238609807 | 2.7 × 10-14 | COPS8 | LRRFIP1 |
| cg08175352 | 3 | 101894206 | 3.2 × 10-14 | ZBTB11, TRMT10C, NXPE3, SENP7, RPL24, PCNP | ZPLD1 |
| cg02333649 | 22 | 19471093 | 5.5 × 10-14 | RTN4R, ARVCF, MRPL40, PRODH, LINC00896, UFD1L, TANGO2, DGCR8, ZDHHC8 | CDC45 |
| cg08956463 | 6 | 41168911 | 5.9 × 10-14 | MDFI, TREM2, FOXP4, C6orf132, UNC5CL | TREML2 |
| cg04320956 | 16 | 69143512 | 6.3 × 10-14 | HAS3, ZFP90, NQO1, NIP7, SLC7A6, CDH3, ESRP2 | HAS3 |
Probes sorted by EWAS P value. Genes shown in bold are the nearest gene.