Table 3.
Prior Studies of the Diagnostic and Clinical Utility and Change in Outcome of rWES, rWGS, and urWGS in Children in ICUs
Reference | Date | Study Type | Sequencing Type | Neonatal and Pediatric Intensive Care Unit (NICU, PICU) Enrollment Criteria | Study Size | Rate of Diagnosis | Rate of Change in Management | Rate of Change in Outcome | Time to Result (days) |
---|---|---|---|---|---|---|---|---|---|
11 | 2012 | cases | urWGS | NICU infants with suspected genetic disease | 4 | 75% | N/D | N/D | 2 |
12,13 | 2015 | cohort | rWGS | <4 mo of age; suspected actionable genetic disease | 35 | 57% | 31% | 29% | 23 |
14 | 2017 | cohort | rWES | <100 days of life; suspected genetic disease | 63 | 51% | 37% | 19% | 13 |
15 | 2018 | RCT | rWGS | <4 mo of age; suspected genetic disease | 32 | 41% | 31% | N/D | 13 |
16 | 2018 | cohort | rWGS | infants; suspected genetic disease | 42 | 43% | 31% | 26% | 23 |
17 | 2018 | cohort | rWES | acutely ill children with suspected genetic diseases | 40 | 53% | 30% | 8% | 16 |
18 | 2018 | cohort | rWGS | children; PICU and cardiovascular ICU | 24 | 42% | 13% | N/D | 9 |
19 | 2019 | cohort | rWGS | 4 months–18 years; PICU; suspected genetic diseases | 38 | 48% | 39% | 8% | 14 |
7 | 2019 | cohort | rWGS | suspected genetic disease | 195 | 21% | 13% | N/D | 21 |
20 | 2019 | cases | urWGS | infants; suspected genetic disease | 7 | 43% | 43% | N/D | 0.8 |
21 | 2019 | cohort | rWES | <4 mo of age; ICU; hypotonia, seizures, metabolic, multiple congenital anomalies | 50 | 54% | 48% | N/D | 5 |
22 | 2020 | cohort | rWES | NICU & PICU; complex | 130 | 48% | 23% | N/D | 3.8 |
23 | 2020 | cohort | rWES | PICU; <6 years; new metabolic/neurologic disease | 10 | 50% | 30% | N/D | 9.8 |
6, here | 2019 | RCT | rWGS | infants; disease of unknown etiology; within 96 h of admission | 94 | 19% | 24% | 10% | 11 |
rWES | 95 | 20% | 20% | 18% | 11 | ||||
urWGS | 24 | 46% | 63% | 25% | 4.6 | ||||
Weighted average, urWGS | 35 | 49% | 58% | 25% | 3.6 | ||||
Weighted average, rWGS or rWES | 894 | 37% | 38% | 16% | 15.0 |
N/D, not done; RCT, randomized controlled trial.