Table 2.

Significantly enriched QTLs identified annotated in the windows explaining more than 1% of the variance for scrotal circumference and sperm motility.

Trait	QTL Type	BTA	Number of QTLs	Expected number of QTLs	p value	FDR-corrected p value
Scrotal circumference	Udder depth	9	5	1.54	3.00 × 10–3	9.38 × 10–3
	Body depth	9	5	1.36	5.00 × 10–3	9.38 × 10–3
	Feet and leg conformation	9	3	0.95	1.60 × 10–2	2.67 × 10–2
	PTA type	9	5	1.55	2.00 × 10–3	9.38 × 10–3
	Udder attachment	9	5	1.44	4.00 × 10–3	9.38 × 10–3
	Strength	9	5	0.89	1.00 × 10–3	9.38 × 10–3
	Teat placement—rear	9	4	0.97	3.00 × 10–3	9.38 × 10–3
	Udder cleft	9	5	1.51	4.00 × 10–3	9.38 × 10–3
	Stature	10	1	0.10	5.00 × 10–3	9.38 × 10–3
Sperm motility	Body weight gain	9	3	0.38	1.00 × 10–3	9.00 × 10–3
	Daughter pregnancy rate	9	1	0.34	4.50 × 10–2	8.10E−02
	Interval to first estrus after calving	9	2	0.61	2.50 × 10–2	8.10 × 10–2
	Milk fat yield	13	4	2.08	4.30 × 10–2	8.10 × 10–2
	Stature	13	3	1.13	3.50 × 10–2	8.10 × 10–2

^aFalse discovery rate.