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. 2020 Nov 18;21(Suppl 10):697. doi: 10.1186/s12864-020-07005-y

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Functional annotation and classification of differentially expressed unigenes between different tissues of AMM. a The reads number and mapped ratio to the reference transcriptome of different tissues (L1-L3:leaf; R1-R3:root; S1-S3: stem). The bar plot represents the clean reads number in different tissues, and the dots plot represents mapped ratio of different tissues to the reference transcriptome in different tissues. b The expression level of unigenes in different tissues from AMM (FPKM ≥0.5). We took the logarithm of each FPKM value of all unigenes. c Gene Ontology (GO) functional classifications of differentially expressed unigenes (Only list significantly enriched GO terms, P value≤0.05). Red: CC Cellular Component; Green: MF Molecular Function; Blue: BP Biological Process. d Significantly enriched KEGG pathways between differentially expressed unigenes. The Q value denoted the corrected P-value (Significant pathways were identified by Q value≤0.05). Count denoted the number of differentially expressed unigenes mapped to a certain pathway according to KEGG database. The pathways with ‘**’ denoted the significantly enriched pathways that included in both between the root vs leaf and root vs stem analysis