Table 1.
Sr. No. | Ligand | Source Plant | PubChem ID | Chemical Group | Binding affinity (kcal/mol) |
|
---|---|---|---|---|---|---|
6M71 (RNA polymerase) |
6LU7 (Main Protease/3CLpro) |
|||||
1 | Andrographolide | Andrographis paniculata | 5318517 | Diterpenoid | −6.3 | −6.5 |
2 | Hydro andrographolide | 72191643 | Diterpenoid | −6.3 | −6.1 | |
3 | Iso andrographolide | 101563021 | Diterpenoid | −6.3 | −6.1 | |
4 | Neo andrographolide | 9848024 | Diterpenoid | −7.0 | −6.5 | |
5 | Oxo andrographolide | 101593061 | Diterpenoid | −7.1 | −6.9 | |
6 | Mulberroside A | Morus alba | 6443484 | Phenols | −9.1 | −6.4 |
7 | Mulberroside C | 190453 | Phenols | −8.1 | −6.3 | |
8 | Mulberroside E | 10030502 | Phenols | −9.0 | −7.0 | |
9 | Mulberroside F | 60208818 | Phenols | −8.8 | −6.7 | |
10 | Mimusopic acid | Mimusops elengi | 6712545 | Triterpene | −6.5 | −6.2 |
11 | Glycyrrhizin | Glycyrrhiza glabara | 46783814 | Triterpenoid | −7.1 | −5.3 |
12 | Curcumin | Curcuma longa | 969516 | Phenols | −7.0 | −5.2 |
13 | Nimbidinin | Azardirachta indica | 101306757 | Triterpene | −7.1 | −5.7 |
14 | Nimbolide | 86287562 | Triterpene | −7.8 | −5.3 | |
15 | Emblicanin A | Phyllanthus emblica | 119058016 | Tannins | −9.2 | −5.7 |
16 | Emblicanin B | 119058017 | Tannins | −7.8 | −3.9 | |
17 | Punigluconin | 44631480 | Tannins | −8.7 | −6.5 | |
18 | Chebulic acid | Terminalia chebula | 12302892 | Phenols | −6.3 | −6.5 |
19 | Arjunolic acid | Terminalia arjuna | 73641 | Triterpenoid | −7.3 | −5.4 |
20 | Anolignan A | Terminalia bellerica | 72391 | Lignan | −7.0 | −6.5 |
21 | Anolignan B | 72388 | Lignan | −6.0 | −6.5 | |
22 | Anolignan C | 454714 | Lignan | −6.0 | −6.5 | |
23 | Remdesivir (RdRp) | – | 121304016 | −7.5 | −5.1 | |
24 | Thymoquinone | – | 10281 | −5.6 | −5.1 | |
25 | Hydroxychloroquine | – | 3652 | −5.2 | −5.7 | |
26 | Favipiravir | – | 492405 | −5.2 | ||
27 | Darunavir(Main Protease/3CLpro) | – | 213039 | – | −5.9 | |
28 | Nelfinavir | – | 64143 | – | −5.8 |
Bold values signifies higher binding affinity as compared to reference drug.