Table 1. Upregulated and downregulated DEGs in SS neuroblastoma samples compared to LS samples.
| Symbol | Name | log2FC | p-adj | Status |
|---|---|---|---|---|
| SMIM28 | small integral membrane protein 28 | 5.4652 | 0.0146 | Up |
| EVX2 | even-skipped homeobox 2 | 4.9304 | 0.0014 | Up |
| NHLH2 | nescient helix-loop-helix 2 | 4.2404 | 0.0046 | Up |
| PRSS12 | serine protease 12 | 3.4788 | 0.0168 | Up |
| POU6F2 | POU class 6 homeobox 2 | 3.4534 | 0.0430 | Up |
| HOXD10 | homeobox D10 | 3.3386 | 0.0357 | Up |
| MAPK15 | mitogen-activated protein kinase 15 | 3.0939 | 0.0499 | Up |
| RTL1 | retrotransposon Gag like 1 | 2.8233 | 0.0241 | Up |
| LGR5 | leucine rich repeat containing G protein-coupled receptor 5 | 2.7453 | 0.0386 | Up |
| DPY19L2P4 | DPY19L2 pseudogene 4 | 2.6439 | 0.0187 | Up |
| STRA6 | signaling receptor and transporter of retinol STRA6 | 2.5625 | 0.0437 | Up |
| MEG9 | maternally expressed 9 | 1.9449 | 0.0146 | Up |
| LINC01410 | long intergenic non-protein coding RNA 1410 | 1.6411 | 0.0334 | Up |
| CYP17A1 | cytochrome P450 family 17 subfamily A member 1 | 4.1951 | 0.0005 | Down |
| OR10AB1P | olfactory receptor family 10 subfamily AB member 1 pseudogene | 4.0068 | 0.0146 | Down |
| MYH14 | myosin heavy chain 14 | 3.7783 | 0.0317 | Down |
| LRRTM3 | leucine rich repeat transmembrane neuronal 3 | 3.6646 | 0.0168 | Down |
| GRIN3A | glutamate ionotropic receptor NMDA type subunit 3A | −3.1104 | 0.0445 | Down |
| HS3ST5 | heparan sulfate-glucosamine 3-sulfotransferase 5 | −2.9968 | 0.0168 | Down |
| NBAS | NBAS subunit of NRZ tethering complex | −2.8992 | 0.0146 | Down |
| FNDC9 | fibronectin type III domain containing 9 | −2.8611 | 0.0419 | Down |
| H1-4 | H1.4 linker histone, cluster member | −2.8427 | 0.0146 | Down |
| CRYAB | crystallin alpha B | −2.7802 | 0.0146 | Down |
| NXPH3 | neurexophilin 3 | −2.5502 | 0.0348 | Down |
| MYL3 | myosin light chain 3 | −2.5310 | 0.0437 | Down |
| CMYA5 | cardiomyopathy associated 5 | −2.4531 | 0.0311 | Down |
| AMIGO2 | adhesion molecule with Ig like domain 2 | −2.2807 | 0.0499 | Down |
| SIK1B | salt inducible kinase 1B (putative) | −2.2002 | 0.0446 | Down |
| EDIL3 | EGF like repeats and discoidin domains 3 | −2.1682 | 0.0311 | Down |
| UBC | ubiquitin C | −1.1926 | 0.0499 | Down |
| lnc-FANCC-1 | 2.6996 | 0.0437 | Up | |
| lnc-KLHL28-1 | 2.5450 | 0.0311 | Up | |
| lnc-TBCCD1-4 | 2.1511 | 0.0051 | Up | |
| lnc-CDC27-8 | 2.1123 | 0.0146 | Up | |
| lnc-SPG21-45 | 2.0232 | 0.0166 | Up | |
| AC137695.1 | 2.0062 | 0.0146 | Up | |
| Lnc-NSUN6-1 | 1.5671 | 0.0499 | Up | |
| Lnc-ZNF814-1 | 1.3445 | 0.0146 | Up | |
| Lnc-METRNL-8 | −2.8955 | 0.0311 | Down | |
| Lnc-METRNL-1 | −2.5951 | 0.0437 | Down |
Shown are gene symbols, gene names, fold change (log2FC), p-adjusted value and gene expression status. Genes without names are non coding RNAs (LNCipedia GeneIDs) except AC137695.1.