Table 1.
Protein identification summary for all fungi.
| Fungus | Taxonomic rank (phylum; class; order) | Proteins identified | Predicted secreted | CAZymes | Uncharacterized proteins |
|---|---|---|---|---|---|
| Aspergillus terreus | Ascomycota; Eurotiomycetes; Eurotiales | 112 | 102 (91%) | 76 (68%) | 19 (17%) |
| Trichoderma reesei | Ascomycota; Sordariomycetes; Hypocreales | 165 | 73 (44%) | 54 (33%) | 39 (24%) |
| Myceliophthora thermophila | Ascomycota; Sordariomycetes; Sordariales | 309 | 159 (51%) | 120 (39%) | 101 (33%) |
| Neurospora crassa | Ascomycota; Sordariomycetes; Sordariales | 45 | 25 (56%) | 18 (40%) | 6 (13%) |
| Phanerochaete chrysosporium | Basidiomycota; Agaricomycetes; Polyporales | 133 | 114 (86%) | 95 (71%) | 9 (7%) |
The table shows the total number of identified proteins in the secretomes for each fungus, based on the joint data obtained for all five substrates. The table also shows the number and fraction of proteins predicted to be secreted, CAZymes and uncharacterized proteins. For each fungus, supplementary material is available. Tables S1–S5 show all proteins identified and their functional annotations, whereas Figures S1–S5 show heat maps of expression levels on the various substrates. The column ‘CAZymes’ includes also stand-alone CBMs, i.e. proteins with no predicted functional domain. The column ‘Uncharacterized proteins’ are proteins annotated as ‘uncharacterized’ by UniProt and proteins for which no peptidase (MEROPS) or carbohydrate-active domains (CAZy) could be predicted.