Table 1.
A list of some key NGS‐based trait discovery studies in some crops
| Crop | Population | Trait analysed | QTL/Gene mapped | References |
|---|---|---|---|---|
| Rice | NIL‐13B4 × GH998 (F2) | Nitrogen use efficiency | 266.5‐kb qNUE6 (LOC_Os06g15370 and LOC_Os06g15420) | Yang et al. (2017) |
| Soybean | Zhonghuang × Jiyu 102(F2) | Seed cotyledon colour | qCC1 (30.7‐kb) and qCC2 (67.7‐kb) | Song et al. (2017) |
| Jikedou 2 × Huachun 18 (F2) | Phytophthora resistance | 146‐kb RpsHC18 (RpsHC18‐NBL1 and RpsHC18‐NBL2) | Zhong et al. (2018) | |
| Brassica napus | Huyou19 × Purler(F2) | Branch angle | branch angle 1 (BnaA0639380D, a homolog of AtYUCCA6) | Wang et al. (2016) |
| Peanut | ZH8 × ZH9 (RIL) | Testa colour | AhTc1, encoding a MYB transcript factor | Zhao et al. (2019) |
| TAG 24 × GBPD 4 (RIL) | Rust and late leaf spot resistance | qRust80D_06, qRust90D_06, qRust 80D_07, qRust 90D_07, qRust 80D_08, qRust 90D_08, qRust 80D_09, qRust 90D_09, qLLS70D_08, qLLS 90D_08, qLLS 90D_09 | Pandey et al. (2017) | |
| ICGV 00350 × ICGV 97045 (RIL) | Fresh seed dormancy | RING‐H2 finger protein and zeaxanthin epoxidase | Kumar et al. (2019) | |
| Yuanza 9102 × Xuzhou 68‐4 (RIL) | Shelling percentage | 10 SNPs in nine candidate genes | Luo et al. (2019) | |
| Chickpea | ICC 4958 × ICC 1882 (RIL) | 100‐seed weight | Ca_0436 and Ca_04607 | Singh et al. (2016a) |
|
ICCV 96029 × CDC Frontier (RIL) ICCV 96029 × Amit (RIL) |
Ascochyta blight | Six candidate genes | Deokar et al. (2019) | |
| Pigeonpea | ICPL 20096 × ICPL 332 (RIL) | Fusarium wilt and sterility mosaic disease resistance | C. cajan_03203 and C. cajan_01839 | Singh et al. (2016b) |