Table 2. Sequence identities between Bucl8-associated efflux pump components and known corresponding proteins.
Protein | Species | PDB code | Sequence identity (%) | Query cover (%) | |
---|---|---|---|---|---|
Bucl8* | VceC | Vibrio cholerae | 1YC9 | 35.8 | 63 |
NodT | Burkholderia mallei | 6U94 | 31.6 | 61 | |
CusC | Escherichia coli | 3PIK | 28.7 | 61 | |
OprJ | Pseudomonas aeruginosa PAO1 | 5AZS | 29.9 | 61 | |
OprM | Pseudomonas aeruginosa | 1WP1 | 29.0 | 61 | |
MtrE | Neisseria gonorrhoeae | 4MT0 | 26.9 | 61 | |
TolC | Escherichia coli | 1EK9 | 24.7 | 38 | |
FusC | FuaA | Stenotrophomonas maltophilia | 41.9 | 44 | |
AaeB | Klebsiella pneumoniae | 24.62 | 60 | ||
MexB | Pseudomonas aeruginosa | 3W9I | NS | ||
AcrB | Escherichia coli | 4ZLJ | NS | ||
CusA | Escherichia coli | 3K07 | NS | ||
FusD | AcrZ | Escherichia coli | 4C48 | NS | |
CusF | Escherichia coli | 3E6Z | NS | ||
YajC | Escherichia coli | 2RDD (in complex) | NS | ||
FusE | MexA | Pseudomonas aeruginosa | 30.99 | 48 | |
AcrA | Escherichia coli | 2F1M | 27.27 | 48 | |
BesA | Borreliella afzelii | 4KKS | 26.56 | 48 | |
EmrA | Klebsiella pneumoniae | 4TKO | 26.73 | 86 | |
CusB | Escherichia coli | 3H94 | NS |
NS = No significant similarity
*Comparison to Bucl8 protein sequence without CL-Ct domains.