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. 2020 Nov 11;16(11):e1009077. doi: 10.1371/journal.pgen.1009077

Table 2. Summary of Novel findings.

MGI-BioVU Meta-Analysis BioVU Replication Cohort
Lab SNP Chr:Pos Allele 1 Allele 2 N Beta P-Value N Beta P-Value Replicated
AlkP rs3843738 17:43739194 A G 39,809 0.04 2.51E-08 22,920 0.01 3.58E-01 No
AlkP rs73004933 19:19675696 T C 39,809 0.08 4.47E-09 22,730 0.05 7.14E-03 Yes
ALT rs112574791 8:145730221 A G 40,116 0.18 3.02E-08 23,007 0.15 5.80E-04 Yes
Amyl rs1930212 1:104324819 A G 10,368 -0.25 1.48E-45 3,573 -0.18 4.69E-09 Yes
Amyl rs8051363 16:75255217 A G 10,368 0.10 1.07E-10 3,564 0.09 4.51E-04 Yes
BasoRE rs386785158 15:70744437 T C 29,653 0.06 7.94E-13 16,191 0.04 2.10E-04 Yes
Bili rs855791 22:37462936 A G 39,890 0.04 2.34E-08 22,918 0.04 1.00E-05 Yes
BUN rs10516957 4:95949206 T C 45,922 -0.06 1.35E-08 25,245 0.01 6.11E-01 No
Ca rs6727384 2:97400324 A G 46,100 -0.04 5.13E-10 25,200 -0.05 2.06E-07 Yes
Ca rs2839899 9:80350999 A G 46,100 0.04 6.76E-09 25,194 0.03 9.47E-03 Yes
Cl rs1030025 2:103105611 A T 45,920 0.05 4.68E-10 25,204 0.02 9.16E-02 No
FT4 rs10122824 9:139109861 T G 15,868 0.07 1.00E-09 9,721 0.07 7.28E-07 Yes
Glucose rs7607980 2:165551201 T C 46,027 -0.05 4.27E-09 25,312 -0.04 2.09E-03 Yes
Glucose rs896854 8:95960511 T C 46,027 -0.04 1.55E-09 25,311 0.01 3.64E-01 No
Glucose rs9273364 6:32626302 T G 46,027 0.05 2.63E-11 24,801 0.05 3.10E-06 Yes
HgbA1C rs3130628 6:31609272 T C 17,407 -0.08 1.23E-08 7,340 0.03 3.79E-02 No
HCO3 (CO2) rs1799913 11:18047255 T G 45,932 -0.04 5.89E-09 25,219 -0.04 7.82E-07 Yes
HCO3 (CO2) rs77375846 2:103155075 T C 45,932 -0.10 9.33E-25 25,217 -0.06 2.78E-05 Yes
IGranRE rs13284665 9:131513370 A G 30,683 0.22 6.61E-74 QC Fail N/A N/A No
IGranAB rs13284665 9:131513370 A G 30,744 0.13 6.76E-35 QC Fail N/A N/A No
K rs10039139 5:137164863 T G 45,941 0.07 8.32E-16 25,211 0.06 1.83E-06 Yes
Lipase rs9377343 6:96512220 A G 12,649 -0.10 4.79E-14 5,564 -0.08 3.60E-05 Yes
Lipase rs8051363 16:75255217 A G 12,649 0.13 2.00E-20 5,549 0.07 8.39E-04 Yes
MCHC rs12352830 9:80041132 C G 46,157 -0.04 4.37E-08 26,243 -0.04 5.77E-05 Yes
MonoRE rs117358683 12:44145965 A G 32,594 -0.23 2.69E-08 16,185 0.04 4.07E-01 No
MPV rs11212635 11:108310702 A T 40,058 0.04 9.55E-09 17,333 -0.01 3.68E-01 No
TProt rs8022180 14:103263020 A G 38,352 0.04 7.24E-10 19,665 0.03 2.63E-03 Yes
Trigs rs6847598 4:76750356 T C 23,963 -0.05 1.58E-08 12,526 -0.03 1.48E-02 Yes
TSH rs12590163 14:105223525 T C 27,441 -0.05 4.68E-08 17,042 -0.04 6.76E-04 Yes
TSH rs310766 3:12233482 A G 27,441 -0.06 1.66E-08 17,079 -0.05 1.42E-05 Yes
TSH rs9275141 6:32651117 T G 27,441 0.05 3.47E-09 17,054 0.04 8.64E-04 Yes