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. 2020 Nov 10;11:483296. doi: 10.3389/fimmu.2020.483296

Figure 1.

Figure 1

A schematic description of the ProTECT workflow. ProTECT can process FASTQs all the way through the prediction of ImmunoActive Regions, including alignment, HLA haplotyping, variant calling, expression estimation, mutation translation, and pMHC binding affinity prediction. ProTECT also allows users to provide pre-computed inputs for various steps instead.