Table 3.
Study model | Epigenetic signatures | Modification types | Reference |
---|---|---|---|
DNA methylation | |||
Human adipocytes | Global DNA methylation | ↑ | [71] |
Human subcutaneous adipose tissue | Methylation of 17 novel obesity-associated genes | DMRs | [72] |
Human white blood cells | Methylation of four CpGs in the first exon of TLR4 gene | ↓ | [73] |
Human white blood cells | DNA methylation of IL6 gene promoter | ↑ | [74] |
Human peripheral white blood cells | DNA methylation of 375 CpGs | DMRs | [75] |
Human adipose-derived stem cells | Global DNA methylation | ↓ | [76] |
Human visceral adipose | 8578 methylation probes (3258 annotated genes) | DMRs | [77] |
Human visceral adipose | Global DNA methylation affecting DNMT expression | DMRs | [78] |
Mice macrophages | DNMT3b expression | ↑ | [79] |
Mice adipose tissue | Dnmt3a expression | ↑ | [80] |
Mice adipose tissue | KLF14 gene methylation | ↑ | [81] |
Porcine leukocytes | Global DNA methylation | ↑ | [82] |
Mice white adipose tissue | Ankrd26 gene methylation | ↑ | [83] |
Human peripheral white blood cells | ANKRD26 methylation | ↑ | [84] |
Human monocyte-derived macrophages | IL1B gene promoter methylation | ↑ | [85] |
Human monocyte-derived macrophages | IL10 gene promoter methylation | ↓ | [85] |
Human cord blood monocytes | Global DNA methylation | ↓ | [86] |
miRNA profiles | |||
Human subcutaneous adipose | Obesity-related miRNAs expression | DERs | [87] |
Human adipose tissue | Exosomal miRNAs expression | DERs | [88] |
Human plasma | miR-34a expression | ↑ | [89] |
Human plasma | miR-126, miR-146a and miR-150 expression | ↓ | [89] |
Human adipose tissue | miR-221, miR-222, and miR-155 | ↑ | [90] |
Human peripheral blood | MiR-374a-5p expression | ↑ | [91] |
Human Th17 cells | miR-326 expression | ↑ | [92] |
Mice adipose tissue macrophages | miR-30 expression | ↓ | [93] |
Mice adipose tissue | miR-34a expression | ↑ | [94] |
Mice adipose tissue macrophages | miR-155 expression | ↑ | [95] |
Human adipose tissue | miR-155 expression | ↑ | [96] |
Mice adipose tissue | miR-27a expression | ↑ | [97] |
Mice peritoneal macrophages | miR-130b expression | ↑ | [98] |
Human adipose tissue | miR-320 expression | ↑ | [99] |
Mice adipose tissue | miR-221 expression | ↑ | [100] |
Human macrophages | miR-223 expression | ↑ | [101] |
Human adipose tissue | miR-193b and miR-126 expressions | ↑ | [102] |
Mice adipose tissue | miR-1934 expression | ↓ | [103] |
Mice adipose tissue | miR883b-5p expression | ↓ | [104] |
Mice adipose tissue macrophages | miRNA-146a | ↓ | [105] |
Mice adipose tissue | miR-706 expression | ↓ | [106] |
Human PBMCs | miR-21 expression | ↓ | [107] |
Mice adipose tissue | miR-301a expression | ↓ | [108] |
Mouse chondrocytes | miR-26a expression | ↓ | [109] |
Histone modifications | |||
Human adipose tissue | HDAC2 expression | ↑ | [110] |
Human adipose tissue | HDAC4, 5, and 6 | ↓ | [110] |
Mice adipose tissue | KDM1A expression | ↓ | [111] |
Human and mice adipose tissue | SirT1 expression | ↓ | [112] |
Mice adipose tissue | Lipin 1 expression and HDAC recruitment | ↓ | [113] |
DMRs Differentially methylated regions, DERs differentially expressed regions