Table 1.
Members of the AP2/ERF gene family in rose genome
| Gene | Accession numbera | Chr.b | Positionc | Intro | Exon | CDS (bp) | AAd | Subfamily |
|---|---|---|---|---|---|---|---|---|
| RcERF001 | RchiOBHm_Chr1g0331141 | 1 | 20.92 | 6 | 7 | 1203 | 401 | AP2 |
| RcERF002 | RchiOBHm_Chr1g0346421 | 1 | 38.78 | 0 | 1 | 831 | 277 | DREB |
| RcERF003 | RchiOBHm_Chr1g0347621 | 1 | 40.31 | 0 | 1 | 819 | 273 | ERF |
| RcERF004 | RchiOBHm_Chr1g0347631 | 1 | 40.33 | 0 | 1 | 639 | 213 | ERF |
| RcERF005 | RchiOBHm_Chr1g0347641 | 1 | 40.38 | 0 | 1 | 717 | 239 | ERF |
| RcERF006 | RchiOBHm_Chr1g0347661 | 1 | 40.38 | 0 | 1 | 651 | 217 | ERF |
| RcERF007 | RchiOBHm_Chr1g0347671 | 1 | 40.38 | 0 | 1 | 612 | 204 | ERF |
| RcERF008 | RchiOBHm_Chr1g0349631 | 1 | 42.73 | 0 | 1 | 711 | 237 | ERF |
| RcERF009 | RchiOBHm_Chr1g0358681 | 1 | 50.76 | 0 | 1 | 903 | 301 | ERF |
| RcERF010 | RchiOBHm_Chr1g0360021 | 1 | 51.85 | 0 | 1 | 633 | 211 | DREB |
| RcERF011 | RchiOBHm_Chr1g0360081 | 1 | 51.90 | 2 | 3 | 1032 | 344 | DREB |
| RcERF012 | RchiOBHm_Chr1g0364341 | 1 | 55.52 | 8 | 9 | 1371 | 457 | AP2 |
| RcERF013 | RchiOBHm_Chr1g0370631 | 1 | 60.12 | 0 | 1 | 987 | 329 | DREB |
| RcERF014 | RchiOBHm_Chr1g0371151 | 1 | 60.47 | 1 | 1 | 1152 | 384 | DREB |
| RcERF015 | RchiOBHm_Chr1g0373621 | 1 | 61.76 | 0 | 1 | 858 | 286 | ERF |
| RcERF016 | RchiOBHm_Chr1g0373631 | 1 | 61.77 | 0 | 1 | 879 | 293 | ERF |
| RcERF017 | RchiOBHm_Chr1g0373641 | 1 | 61.77 | 0 | 1 | 642 | 214 | ERF |
| RcERF018 | RchiOBHm_Chr1g0376641 | 1 | 63.85 | 0 | 1 | 693 | 231 | DREB |
| RcERF019 | RchiOBHm_Chr1g0376651 | 1 | 63.86 | 0 | 1 | 699 | 233 | DREB |
| RcERF020 | RchiOBHm_Chr1g0380021 | 1 | 65.82 | 0 | 1 | 1092 | 364 | ERF |
| RcERF021 | RchiOBHm_Chr2g0088321 | 2 | 2.93 | 1 | 2 | 615 | 205 | DREB |
| RcERF022 | RchiOBHm_Chr2g0091471 | 2 | 5.12 | 0 | 1 | 765 | 255 | DREB |
| RcERF023 | RchiOBHm_Chr2g0095581 | 2 | 8.53 | 0 | 1 | 630 | 210 | DREB |
| RcERF024 | RchiOBHm_Chr2g0105221 | 2 | 16.56 | 0 | 1 | 699 | 233 | ERF |
| RcERF025 | RchiOBHm_Chr2g0105401 | 2 | 16.68 | 0 | 1 | 726 | 242 | ERF |
| RcERF026 | RchiOBHm_Chr2g0105461 | 2 | 16.74 | 0 | 1 | 639 | 213 | ERF |
| RcERF027 | RchiOBHm_Chr2g0105481 | 2 | 16.76 | 0 | 1 | 579 | 193 | ERF |
| RcERF028 | RchiOBHm_Chr2g0105501 | 2 | 16.78 | 0 | 1 | 543 | 181 | ERF |
| RcERF029 | RchiOBHm_Chr2g0105521 | 2 | 16.81 | 0 | 1 | 624 | 208 | ERF |
| RcERF030 | RchiOBHm_Chr2g0106221 | 2 | 17.67 | 9 | 10 | 1605 | 535 | AP2 |
| RcERF031 | RchiOBHm_Chr2g0106241 | 2 | 17.71 | 0 | 1 | 519 | 173 | DREB |
| RcERF032 | RchiOBHm_Chr2g0108831 | 2 | 20.29 | 8 | 9 | 1980 | 660 | AP2 |
| RcERF033 | RchiOBHm_Chr2g0111031 | 2 | 22.67 | 8 | 8 | 1629 | 543 | AP2 |
| RcERF034 | RchiOBHm_Chr2g0115041 | 2 | 27.01 | 1 | 1 | 1047 | 349 | ERF |
| RcERF035 | RchiOBHm_Chr2g0118211 | 2 | 30.54 | 1 | 2 | 966 | 322 | ERF |
| RcERF036 | RchiOBHm_Chr2g0118251 | 2 | 30.58 | 1 | 2 | 1164 | 388 | ERF |
| RcERF037 | RchiOBHm_Chr2g0126301 | 2 | 40.60 | 0 | 1 | 1398 | 466 | ERF |
| RcERF038 | RchiOBHm_Chr2g0130611 | 2 | 46.70 | 0 | 1 | 537 | 179 | ERF |
| RcERF039 | RchiOBHm_Chr2g0132251 | 2 | 48.70 | 6 | 7 | 1074 | 358 | AP2 |
| RcERF040 | RchiOBHm_Chr2g0133451 | 2 | 50.24 | 1 | 2 | 603 | 201 | DREB |
| RcERF041 | RchiOBHm_Chr2g0133601 | 2 | 50.47 | 0 | 1 | 888 | 296 | ERF |
| RcERF042 | RchiOBHm_Chr2g0135921 | 2 | 53.15 | 1 | 2 | 582 | 194 | DREB |
| RcERF043 | RchiOBHm_Chr2g0139661 | 2 | 57.18 | 0 | 1 | 786 | 262 | DREB |
| RcERF044 | RchiOBHm_Chr2g0145271 | 2 | 62.91 | 8 | 9 | 1731 | 577 | AP2 |
| RcERF045 | RchiOBHm_Chr2g0147651 | 2 | 65.22 | 2 | 2 | 1176 | 392 | ERF |
| RcERF046 | RchiOBHm_Chr2g0157901 | 2 | 74.24 | 0 | 1 | 693 | 231 | ERF |
| RcERF047 | RchiOBHm_Chr2g0160621 | 2 | 76.47 | 1 | 1 | 582 | 194 | DREB |
| RcERF048 | RchiOBHm_Chr2g0163201 | 2 | 78.78 | 0 | 1 | 909 | 303 | RAV |
| RcERF049 | RchiOBHm_Chr2g0166851 | 2 | 81.58 | 0 | 1 | 1071 | 357 | ERF |
| RcERF050 | RchiOBHm_Chr2g0167081 | 2 | 81.74 | 0 | 1 | 1257 | 419 | ERF |
| RcERF051 | RchiOBHm_Chr2g0169071 | 2 | 83.36 | 4 | 5 | 1377 | 459 | AP2 |
| RcERF052 | RchiOBHm_Chr3g0447531 | 3 | 0.21 | 7 | 8 | 2496 | 832 | AP2 |
| RcERF053 | RchiOBHm_Chr3g0449251 | 3 | 1.12 | 9 | 8 | 804 | 268 | Soloist |
| RcERF054 | RchiOBHm_Chr3g0450011 | 3 | 1.66 | 0 | 1 | 702 | 234 | ERF |
| RcERF055 | RchiOBHm_Chr3g0450351 | 3 | 1.92 | 0 | 1 | 900 | 300 | ERF |
| RcERF056 | RchiOBHm_Chr3g0461691 | 3 | 9.68 | 1 | 2 | 1791 | 597 | DREB |
| RcERF057 | RchiOBHm_Chr3g0468481 | 3 | 14.49 | 8 | 9 | 1026 | 342 | AP2 |
| RcERF058 | RchiOBHm_Chr3g0472281 | 3 | 18.19 | 0 | 1 | 615 | 205 | DREB |
| RcERF059 | RchiOBHm_Chr3g0472361 | 3 | 18.24 | 0 | 1 | 600 | 200 | DREB |
| RcERF060 | RchiOBHm_Chr3g0480891 | 3 | 26.82 | 5 | 6 | 1212 | 404 | AP2 |
| RcERF061 | RchiOBHm_Chr3g0481251 | 3 | 27.33 | 0 | 1 | 1047 | 349 | DREB |
| RcERF062 | RchiOBHm_Chr3g0482661 | 3 | 28.70 | 8 | 9 | 1275 | 425 | AP2 |
| RcERF063 | RchiOBHm_Chr4g0392461 | 4 | 7.95 | 0 | 1 | 468 | 156 | ERF |
| RcERF064 | RchiOBHm_Chr4g0392501 | 4 | 7.98 | 0 | 1 | 804 | 268 | ERF |
| RcERF065 | RchiOBHm_Chr4g0401791 | 4 | 20.05 | 0 | 1 | 918 | 306 | ERF |
| RcERF066 | RchiOBHm_Chr4g0401801 | 4 | 20.08 | 8 | 9 | 1659 | 553 | AP2 |
| RcERF067 | RchiOBHm_Chr4g0405371 | 4 | 25.78 | 6 | 7 | 1098 | 366 | AP2 |
| RcERF068 | RchiOBHm_Chr4g0415231 | 4 | 39.84 | 0 | 1 | 1206 | 402 | ERF |
| RcERF069 | RchiOBHm_Chr4g0421551 | 4 | 47.20 | 1 | 2 | 1209 | 403 | ERF |
| RcERF070 | RchiOBHm_Chr4g0423581 | 4 | 49.24 | 1 | 2 | 765 | 255 | ERF |
| RcERF071 | RchiOBHm_Chr4g0428551 | 4 | 53.58 | 0 | 1 | 813 | 271 | ERF |
| RcERF072 | RchiOBHm_Chr4g0428891 | 4 | 53.79 | 1 | 2 | 708 | 236 | ERF |
| RcERF073 | RchiOBHm_Chr4g0433071 | 4 | 57.25 | 0 | 1 | 1284 | 428 | ERF |
| RcERF074 | RchiOBHm_Chr4g0435261 | 4 | 58.89 | 1 | 1 | 1041 | 347 | DREB |
| RcERF075 | RchiOBHm_Chr4g0435771 | 4 | 59.21 | 0 | 1 | 1098 | 366 | RAV |
| RcERF076 | RchiOBHm_Chr4g0440541 | 4 | 62.65 | 5 | 6 | 1299 | 433 | AP2 |
| RcERF077 | RchiOBHm_Chr5g0008991 | 5 | 5.94 | 0 | 1 | 792 | 264 | ERF |
| RcERF078 | RchiOBHm_Chr5g0009711 | 5 | 6.43 | 0 | 1 | 510 | 170 | ERF |
| RcERF079 | RchiOBHm_Chr5g0009741 | 5 | 6.45 | 0 | 1 | 804 | 268 | ERF |
| RcERF080 | RchiOBHm_Chr5g0032721 | 5 | 26.47 | 0 | 1 | 750 | 250 | ERF |
| RcERF081 | RchiOBHm_Chr5g0041261 | 5 | 36.01 | 0 | 1 | 678 | 226 | ERF |
| RcERF082 | RchiOBHm_Chr5g0046591 | 5 | 42.67 | 0 | 1 | 1098 | 366 | RAV |
| RcERF083 | RchiOBHm_Chr5g0061501 | 5 | 67.00 | 5 | 6 | 855 | 285 | AP2 |
| RcERF084 | RchiOBHm_Chr5g0073531 | 5 | 79.54 | 0 | 1 | 798 | 266 | ERF |
| RcERF085 | RchiOBHm_Chr5g0077201 | 5 | 83.01 | 7 | 8 | 1659 | 553 | AP2 |
| RcERF086 | RchiOBHm_Chr5g0080541 | 5 | 86.52 | 0 | 1 | 1095 | 365 | RAV |
| RcERF087 | RchiOBHm_Chr5g0083271 | 5 | 88.95 | 0 | 1 | 846 | 282 | ERF |
| RcERF088 | RchiOBHm_Chr6g0257181 | 6 | 12.45 | 0 | 1 | 804 | 268 | ERF |
| RcERF089 | RchiOBHm_Chr6g0274591 | 6 | 36.05 | 1 | 2 | 1353 | 451 | ERF |
| RcERF090 | RchiOBHm_Chr6g0276671 | 6 | 38.87 | 0 | 1 | 969 | 323 | ERF |
| RcERF091 | RchiOBHm_Chr6g0284081 | 6 | 47.38 | 6 | 6 | 669 | 223 | Soloist |
| RcERF092 | RchiOBHm_Chr6g0288231 | 6 | 51.49 | 0 | 1 | 789 | 263 | ERF |
| RcERF093 | RchiOBHm_Chr6g0288241 | 6 | 51.53 | 0 | 1 | 450 | 150 | ERF |
| RcERF094 | RchiOBHm_Chr6g0288261 | 6 | 51.55 | 0 | 1 | 522 | 174 | ERF |
| RcERF095 | RchiOBHm_Chr6g0288271 | 6 | 51.55 | 0 | 1 | 450 | 150 | ERF |
| RcERF096 | RchiOBHm_Chr6g0288281 | 6 | 51.55 | 0 | 1 | 477 | 159 | ERF |
| RcERF097 | RchiOBHm_Chr6g0289271 | 6 | 52.38 | 0 | 1 | 636 | 212 | ERF |
| RcERF098 | RchiOBHm_Chr6g0294441 | 6 | 56.77 | 1 | 2 | 927 | 309 | ERF |
| RcERF099 | RchiOBHm_Chr6g0295481 | 6 | 57.48 | 0 | 1 | 702 | 234 | DREB |
| RcERF100 | RchiOBHm_Chr6g0298011 | 6 | 59.58 | 1 | 2 | 684 | 228 | DREB |
| RcERF101 | RchiOBHm_Chr6g0299771 | 6 | 60.81 | 1 | 2 | 618 | 206 | DREB |
| RcERF102 | RchiOBHm_Chr6g0301981 | 6 | 62.18 | 0 | 1 | 771 | 257 | DREB |
| RcERF103 | RchiOBHm_Chr6g0306191 | 6 | 64.95 | 0 | 1 | 747 | 249 | DREB |
| RcERF104 | RchiOBHm_Chr6g0308371 | 6 | 66.49 | 1 | 1 | 468 | 156 | DREB |
| RcERF105 | RchiOBHm_Chr6g0310091 | 6 | 67.50 | 8 | 9 | 1971 | 657 | AP2 |
| RcERF106 | RchiOBHm_Chr7g0184251 | 7 | 4.91 | 0 | 1 | 642 | 214 | ERF |
| RcERF107 | RchiOBHm_Chr7g0185311 | 7 | 5.49 | 3 | 2 | 1143 | 381 | DREB |
| RcERF108 | RchiOBHm_Chr7g0187951 | 7 | 7.65 | 0 | 1 | 975 | 325 | ERF |
| RcERF109 | RchiOBHm_Chr7g0188681 | 7 | 8.08 | 1 | 2 | 798 | 266 | ERF |
| RcERF110 | RchiOBHm_Chr7g0188691 | 7 | 8.09 | 1 | 2 | 711 | 237 | ERF |
| RcERF111 | RchiOBHm_Chr7g0195031 | 7 | 13.00 | 0 | 1 | 561 | 187 | ERF |
| RcERF112 | RchiOBHm_Chr7g0195581 | 7 | 13.38 | 0 | 1 | 1005 | 335 | ERF |
| RcERF113 | RchiOBHm_Chr7g0195661 | 7 | 13.46 | 12 | 9 | 1464 | 488 | Soloist |
| RcERF114 | RchiOBHm_Chr7g0199231 | 7 | 17.30 | 0 | 1 | 840 | 280 | DREB |
| RcERF115 | RchiOBHm_Chr7g0199251 | 7 | 17.32 | 0 | 1 | 723 | 241 | DREB |
| RcERF116 | RchiOBHm_Chr7g0199301 | 7 | 17.34 | 0 | 1 | 720 | 240 | DREB |
| RcERF117 | RchiOBHm_Chr7g0199331 | 7 | 17.37 | 0 | 1 | 723 | 241 | DREB |
| RcERF118 | RchiOBHm_Chr7g0199351 | 7 | 17.38 | 0 | 1 | 753 | 251 | DREB |
| RcERF119 | RchiOBHm_Chr7g0199381 | 7 | 17.42 | 0 | 1 | 726 | 242 | DREB |
| RcERF120 | RchiOBHm_Chr7g0203971 | 7 | 21.55 | 0 | 1 | 669 | 223 | DREB |
| RcERF121 | RchiOBHm_Chr7g0204031 | 7 | 21.62 | 0 | 1 | 537 | 179 | DREB |
| RcERF122 | RchiOBHm_Chr7g0204611 | 7 | 22.29 | 0 | 1 | 1023 | 341 | ERF |
| RcERF123 | RchiOBHm_Chr7g0204641 | 7 | 22.33 | 1 | 2 | 876 | 292 | ERF |
| RcERF124 | RchiOBHm_Chr7g0230931 | 7 | 54.58 | 1 | 2 | 561 | 187 | DREB |
| RcERF125 | RchiOBHm_Chr7g0231481 | 7 | 55.10 | 0 | 1 | 498 | 166 | DREB |
| RcERF126 | RchiOBHm_Chr7g0231501 | 7 | 55.11 | 0 | 1 | 498 | 166 | DREB |
| RcERF127 | RchiOBHm_Chr7g0231631 | 7 | 55.25 | 0 | 1 | 588 | 196 | DREB |
| RcERF128 | RchiOBHm_Chr7g0231641 | 7 | 55.30 | 0 | 1 | 582 | 194 | DREB |
| RcERF129 | RchiOBHm_Chr7g0231921 | 7 | 55.76 | 0 | 1 | 582 | 194 | DREB |
| RcERF130 | RchiOBHm_Chr7g0235201 | 7 | 59.94 | 0 | 1 | 552 | 184 | DREB |
| RcERF131 | RchiOBHm_Chr7g0239701 | 7 | 65.48 | 0 | 1 | 1131 | 377 | ERF |
aAvailable at https://lipm-browsers.toulouse.inra.fr/pub/RchiOBHm-V2/
bChromosome
cStarting position (Mb)
dAmino Acids