Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Strain, strain background (M. musculus) |
C57BL/6J | Charles River | RRID:IMSR_JAX:000664 | |
| Genetic reagent (M. musculus) |
B6;C3-Tg(Scnn1a- cre)3Aibs/J |
The Jackson Laboratory | RRID:IMSR_JAX:009613 | |
| Recombinant DNA reagent |
pAAV.Syn.Flex. GCaMP6s.WPRE.SV40 |
Penn Vector Core | RRID:Addgene_100845; Addgene viral prep # 100845-AAV1 |
Chen et al., 2013 |
| Recombinant DNA reagent |
pGP-AAV-syn- FLEX-jGCaMP7f-WPRE |
Addgene | RRID:Addgene_104492; Addgene viral prep # 104492-AAV1 |
Dana et al., 2016 |
| Recombinant DNA reagent |
AAV pCAG- FLEX-EGFP-WPRE |
Penn Vector Core | RRID:Addgene_51502; Addgene viral prep # 51502-AAV1 |
Oh et al., 2014 |
| Recombinant DNA reagent |
AAV.CaMKII0.4. Cre.SV40 |
Penn Vector Core | RRID:Addgene_105558; Addgene viral prep # 105558-AAV1 |
|
| Commercial assay or kit |
Kwik-Cast | World Precision Instruments | Cat# KWIK-CAST | |
| Commercial assay or kit |
Sylgard Silicone Elastomer |
Dow Inc | Cat# Sylgard 164 | |
| Commercial assay or kit |
Norland Optical Adhesive 63 |
Norland | Cat# NOA 63 | |
| Commercial assay or kit |
GRIN lens | Grintech | Cat# NEM-050- 25-10-860-S |
|
| Commercial assay or kit |
GRIN lens | Grintech | Cat# NEM-050- 43-00-810-S-1.0p |
|
| Commercial assay or kit |
GRIN lens | Grintech | Cat# GT-IFRL-035- cus-50-NC |
|
| Commercial assay or kit |
GRIN lens | Grintech | Cat# NEM-035- 16air-10–810 S-1.0p |
|
| Chemical compound, drug |
bisBenzimide H 33342 trihydrochloride (Hoechst) |
Sigma-Aldrich | Cat# B2261; CAS: 23491-52-3 | |
| Chemical compound, drug |
Red Retrobeads | LumaFluor Inc | Red Retrobeads | |
| Software, algorithm | Zemax OpticStudio 15 | Zemax | https://www.zemax.com/products/opticstudio | |
| Software, algorithm | MATLAB R2017a | Mathworks | RRID:SCR_001622; https://it.mathworks.com/products/matlab.html |
|
| Software, algorithm | GraphPad PRISM | GraphPad PRISM | RRID:SCR_002798; https://www.graphpad.com/ |
|
| Software, algorithm | ImageJ/Fiji | Fiji | RRID:SCR_002285; http://fiji.sc/ |
|
| Software, algorithm | NoRMCorre | Pnevmatikakis and Giovannucci, 2017 | https://github.com/flatironinstitute/NoRMCorre | |
| Software, algorithm | CaImAn | Giovannucci et al., 2019 | https://github.com/flatironinstitute/CaImAn-MATLAB | |
| Software, algorithm |
Population Spike Train
Factorization Toolbox for Matlab Version 1.0 |
Onken et al., 2016 | https://stommac.eu/index.php/code | |
| Software, algorithm | LIBSVM | Chang and Lin, 2011 | https://www.csie.ntu.edu.tw/~cjlin/libsvm/ | |
| Software, algorithm | Information Breakdown ToolBox |
Magri et al., 2009 | N/A | |
| Software, algorithm | Software used in this paper for generation of artificial time series |
https://github.com/moni90/eFOV_microendoscopes_sim |
Figure 4a–h, Figure 4—figure supplement 1a–c and Figure 4—figure supplement 2a–c |
|
| Software, algorithm | Software to compute recall, precision, and F1 score |
Soltanian-Zadeh et al., 2019 | https://github.com/soltanianzadeh/STNeuroNet | |
| Other | Basler ace camera | Basler AG | Cat# acA800-510um | |
| Other | Optical encoder | Broadcom | AEDB-9140-A13 | |
| Other | Zortrax M200 3D printer | Zortrax | M200 | |
| Other | Z-ULTRAT 3D printer filament |
Zortrax | Z-ULTRAT | |
| Other | Arduino Uno | Arduino | Arduino Uno |