TABLE 6.

Sanger versus nanopore R9.4.1 flow cell sequence IGS mismatches

Strain	Genotype	No. of errors								% identityb
		Homopolymer mismatches					Repetitive motifs	Deletionsa	Mismatches
		A	T	G	C	Total
W3482	VGI	0	0	0	0	0	0	0	0	100
W10	VGI	1	7	6	0	14	0	0	0	99.55
W85	VGI	3	4	5	0	12	0	0	0	99.64
W3481	VGII	4	4	4	0	12	0	0	0	99.52
W432	VGII	1	5	4	0	10	0	0	0	99.58
W530	VGII	5	5	5	0	15	2	0	0	99.38
W3479	VGIII	0	4	5	0	9	0	0	0	99.73
W15	VGIII	1	0	3	0	4	0	0	0	99.85
W16	VGIII	3	5	5	0	13	0	0	1	99.58
W83	VGIII	3	3	6	0	12	0	0	0	99.61
W84	VGIII	0	4	2	0	6	0	0	0	99.76
W87	VGIII	2	4	4	0	10	0	0	0	99.70
W89	VGIII	2	3	4	0	9	0	0	0	99.70
W90	VGIII	1	4	3	0	8	0	0	0	99.70
W3480	VGIV	1	5	5	0	11	0	0	0	99.61
W3477	VNI	6	3	8	0	17	0	0	0	99.48
W72	VNI	5	2	5	0	12	0	0	0	99.63
W473	VNI	6	4	6	0	16	0	0	1	99.51
W516	VNI	5	4	7	0	16	5	0	6	99.20
W1047	VNI	7	3	10	0	20	0	1	1	99.34
H99	VNI	6	3	7	0	16	2	0	2	99.23
W3478	VNII	7	3	9	0	19	0	0	0	99.34
W3484	VNIV	1	4	8	0	13	2	0	0	99.48
JEC21	VNIV	1	5	8	0	14	3	0	0	99.48
W77	VNIV	3	4	4	0	11	0	0	0	99.54
W78	VNIV	1	0	2	1	4	2	0	0	99.75
W79	VNIV	2	3	4	0	9	2	0	0	99.60
Total		77	95	139	1	301	18	1	11
Avg		2.85	3.52	5.15	0.04	11.15	0.67	0.04	0.41	99.57

^aDeletions in regions other than a homopolymer.

^bBased on comparison to Sanger sequence of the same region.