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. 2020 Nov 18;58(12):e01972-20. doi: 10.1128/JCM.01972-20

TABLE 8.

Sanger versus nanopore R10.3 flow cell sequence IGS mismatches

Strain Genotype No. of errors
% identityb
Homopolymer mismatches
Repetitive motifs Deletionsa Mismatches
A T G C Total
W3482 VGI 0 0 2 1 3 0 0 0 99.91
W10 VGI 1 1 3 0 5 0 0 0 99.85
W85 VGI 0 0 2 0 2 0 0 0 99.94
W3481 VGII 0 2 6 1 9 0 0 0 99.73
W432 VGII 0 1 5 0 0 6 0 0 99.82
W530 VGII 1 1 6 0 8 0 2 0 99.70
W3479 VGIII 0 0 1 1 2 0 0 0 99.94
W15 VGIII 1 0 3 0 4 0 0 0 99.88
W16 VGIII 1 0 3 0 4 0 0 1 99.85
W83 VGIII 0 1 2 0 3 0 0 0 99.91
W84 VGIII 2 2 4 0 8 2 0 0 99.70
W87 VGIII 0 1 2 0 3 0 0 0 99.91
W89 VGIII 0 1 3 1 5 0 0 0 99.85
W90 VGIII 2 1 3 0 6 0 0 0 99.82
W3480 VGIV 0 0 2 0 2 0 0 0 99.94
W3477 VNI 0 1 7 0 8 2 0 0 99.71
W72 VNI 1 0 1 1 3 0 0 0 99.91
W473 VNI 2 0 2 0 4 0 0 1 99.86
W516 VNI 0 0 2 0 2 2 0 0 99.89
W1047 VNI 2 0 1 0 3 0 0 0 99.91
H99 VNI 1 0 3 0 4 2 0 0 99.83
W3478 VNII 5 0 4 0 9 0 0 0 99.74
W3484 VNIV 6 0 3 0 9 2 0 2 99.60
JEC21 VNIV 0 0 2 1 3 0 1 0 99.87
W77 VNIV 6 0 2 0 8 2 0 0 99.70
W78 VNIV 4 0 2 1 7 0 0 0 99.79
W79 VNIV 1 0 2 1 4 0 0 0 99.88
Total 36 12 78 8 128 18 3 4
Avg 1.33 0.44 2.89 0.30 4.74 0.67 0.11 0.15 99.83
a

Deletions in regions other than a homopolymer.

b

Based on comparison to Sanger sequence of the same region.