REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit monoclonal anti-FHL2 | Abcam | Cat# ab202584 |
Mouse monoclonal anti-paxillin | BD Biosciences | Cat# 610052 |
Alexa Fluor 488 goat anti-rabbit secondary antibody | ThermoFisher | Cat# A32731 |
Alexa Fluor 568 goat anti-mouse secondary antibody | ThermoFisher | Cat# A11031 |
Bacterial Strains | ||
NEB 5-alpha competent E. coli | NEB | C2987U |
Chemicals, Peptides, and Recombinant Proteins | ||
Fibronectin | EMD Millipore | Cat# FC010 |
Alexa Fluor 568 phalloidin | ThermoFisher | Cat# A12380 |
Alexa Fluor 647 phalloidin | ThermoFisher | Cat# A22287 |
DAPI | ThermoFisher | Cat# D1306 |
Hoechst | Invitrogen | Cat# H1399 |
Y-27632 | Sigma-Aldrich | Cat# 688000 |
Cytochalasin D | EMD Millipore | Cat# 504776 |
PF573228 | Sigma-Aldrich | Cat# PZ0117 |
mPEG-silane | Laysan Bio | Cat# MPEG-SIL-5000 |
Rhodamine-labeled G-actin (Rabbit skeletal muscle) | Cytoskeleton | Cat# AR05 |
Janelia Fluor 646 HaloTag ligand | Promega | Cat# GA1121 |
Polyvinylpyrrolidone | Sigma-Aldrich | Cat# PVP10 |
Critical Commercial Assays | ||
QIAprep spin miniprep kit | Qiagen | 27106 |
PureYield plasmid maxiprep system | Promega | A2392 |
SE Cell Line 4D-Nucleofector X Kit L | Lonza | V4XC-1024 |
Experimental Models: Cell Lines | ||
MEF | Mary Beckerle Lab Huntsman Cancer Institute University of Utah | N/A |
U2OS | ATCC | HTB-96 |
FreeStyle 293-F | ThermoFisher | R79007 |
Oligonucleotides | ||
DNA primers, see Table S2 | This study | N/A |
Recombinant DNA | ||
mApple-F-tractin | Michael Davidson Lab Florida State University | N/A |
Zyxin-fusionRed | Michael Davidson Lab Florida State University | N/A |
Myosin Va (AA 1–1091) | Dharmacon | BC172485 |
Myosin VI (AA 1–1021) | James Sellers Lab NHLBI, NIH | N/A |
LifeAct-mApple | Mary Beckerle Lab Huntsman Cancer Institute University of Utah | N/A |
Other plasmid DNAs, see Table S2 | This study | N/A |
Software and Algorithms | ||
FIJI | Schindelin et al., 2012 | https://imagej.net/Fiji |
ChimeraX | Goddard et al., 2018 | https://www.cgl.ucsf.edu/chimerax/ |
JalView | Waterhouse et al., 2009 | https://www.jalview.org/ |
GraphPad Prism 8 | GraphPad Software | https://www.graphpad.com/scientific-software/prism/ |
Custom Python scripts computing actin and nuclear enrichments | This paper | https://github.com/alushinlab/LIM-domain |
Custom Python scripts for patch detection and analysis | This paper | https://github.com/alushinlab/LIM-domain |
Other | ||
4-well stretch chamber | Strexcell | STB-CH-4W |
Flexcell UniFlex culture plates | Flexcell | UF-4001P |
50-kPa softwell 12G plate | Matrigen | 50-kPa |
12-kPa softwell 12G plate | Matrigen | 12-kPa |
CultureWell reusable gasket | GraceBio | 103280 |
NuPAGE 12% Bis-Tris gel | Invitrogen | NP0343BOX |
Also see: Table S2. Additional oligonucleotides and recombinant DNAs used in this paper. Related to the Key Resources Table.