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. Author manuscript; available in PMC: 2021 Nov 19.
Published in final edited form as: Mol Cell. 2020 Nov 6;80(4):666–681.e8. doi: 10.1016/j.molcel.2020.10.014

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and Virus Strains
E. Coli BL21(DE3) Chemically Competent Cells Millipore Sigma CMC0014-20X40UL
NEB® Turbo Competent E. coli (High Efficiency) New England Biolabs C2984H
Chemicals, Peptides, and Recombinant Proteins
AcTEV Protease Fisher Scientific 12-575-015
Ribonuclease A from bovine pancreas Millipore Sigma R6513
cOmplete™ Protease Inhibitor Cocktail Roche 11697498001
Glucose Oxidase from Aspergillus niger Sigma-Aldrich G2133
Catalase from bovine liver Sigma-Aldrich C3155
IGEPAL® CA-630 Sigma-Aldrich I8896
His-Trap FF Crude, 5 mL GE Healthcare 17528601
Cy3 NHS Ester GE Healthcare PA13101
Cy5 NHS Ester GE Healthcare PA15100
Alexa Fluor™ 594 NHS Ester (Succinimidyl Ester) Thermo Scientific A20004
Abberior STAR 635P Abberior ST635P
Janelia Fluor® 646 HaloTag® Ligand Promega GA112A
RNase Inhibitor, Murine New England Biolabs M0314L
Lipofectamine™ 3000 Transfection Reagent Thermo Scientific L3000001
Sodium (meta)arsenite (>90%) Millipore Sigma S7400-100G
Experimental Models: Cell Lines
Human: SH-SY5Y ATCC CRL-2266
Oligonucleotides
Biotin-18mer: 5’- /biotin/rUrGrG rCrGrA rCrGrG rCrArG rCrGrA rGrGrC/3AmMO/ -3’ Niaki et al., 2020; IDT N/A
U50-18mer: 5’- /5AmMC6/rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrG rCrCrU rCrGrC rUrGrC rCrGrU rCrGrC rCrA -3’ Niaki et al., 2020; IDT N/A
U40: 5’- rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rU/3AmMO/ -3’ Niaki et al., 2020; IDT N/A
Recombinant DNA
pTHMT/FUSWT (encoding 6xHis-MBP-FUSWT) Niaki et al., 2020 N/A
pTHMT/FUSR244C (encoding 6xHis-MBP-FUSR244C) Niaki et al., 2020 N/A
pTHMT/FUSR216C (encoding 6xHis-MBP-FUSR216C) Niaki et al., 2020 N/A
pTHMT/FUSR521G (encoding 6xHis-MBP-FUSR521G) Niaki et al., 2020 N/A
pTHMT/FUSG156E (encoding 6xHis-MBP-FUSG156E) Niaki et al., 2020 N/A
pTHMT/FUSG187S (encoding 6xHis-MBP-FUSG187S) Niaki et al., 2020 N/A
pTHMT/FUSG399V(encoding 6xHis-MBP-FUSG399V) Niaki et al., 2020 N/A
pTHMT/FUSRBD(encoding 6xHis-MBP-FUSRBD) Genscript N/A
pTHMT/FUSLCD(encoding 6xHis-MBP-FUSLCD) Genscript N/A
pTHMT/FUSG156A(encoding 6xHis-MBP-FUSG156A) Genscript N/A
pTHMT/FUSG156D(encoding 6xHis-MBP-FUSG156D) Genscript N/A
pTHMT/FUSG156Q(encoding 6xHis-MBP-FUSG156Q) Genscript N/A
pTHMT/FUSG154E(encoding 6xHis-MBP-FUSG154E) Genscript N/A
pTHMT/FUSG156P(encoding 6xHis-MBP-FUSG154E) Genscript N/A
pTHMT/FUSWT-EGFP (encoding 6xHis-MBP-FUSWT-EGFP) Niaki et al., 2020 N/A
pTHMT/FUSWT-mCherry (encoding 6xHis-MBP-FUSWT-mCherry) Genscript N/A
pTHMT/FUSR244C-EGFP (encoding 6xHis-MBP-FUSR244C-EGFP) Genscript N/A
pTHMT/FUSG156E-EGFP (encoding 6xHis-MBP-FUSG156E-EGFP) Genscript N/A
pFUSWT-GFP_pcDNA3.1(+)-C-eGFP Genscript N/A
pFUSWT-Halo_piggybac-EF1-Halo Li et al., 2016; Genscript N/A
pFUSR244C-Halo_piggybac-EF1-Halo Li et al., 2016; Genscript N/A
pFUSG156E-Halo_piggybac-EF1-Halo Li et al., 2016; Genscript N/A
Software and Algorithms
MATLAB and IDL scripts https://physics.illinois.edu/cplc/software/; This manuscript
NIS-Elements Ar Package Nikon Inc.
Adobe Photoshop CC Adobe (https://www.adobe.com/products/photoshop.html)
Prism 7 GraphPad (https://www.graphpad.com/scientific-software/prism/)
ImageJ (Fiji) NIH (https://imagej.nih.gov/ij/)
RStudio RStudio (https://rstudio.com/products/rstudio/download/)
Other
Nunc™ Lab-Tek™ Chambered Coverglass Thermo Scientific 155361
DNA Retardation Gels (6%) Invitrogen EC63655BOX
Amicon Ultra-0.5 Centrifugal Filter Unit Millipore UFC501096
Zeba™ Spin Desalting Columns, 7K MWCO, 0.5 mL Thermo Scientific 89883