Bacterial and Virus Strains |
E. Coli BL21(DE3) Chemically Competent Cells |
Millipore Sigma |
CMC0014-20X40UL |
NEB® Turbo Competent E. coli (High Efficiency) |
New England Biolabs |
C2984H |
Chemicals, Peptides, and Recombinant Proteins |
AcTEV Protease |
Fisher Scientific |
12-575-015 |
Ribonuclease A from bovine pancreas |
Millipore Sigma |
R6513 |
cOmplete™ Protease Inhibitor Cocktail |
Roche |
11697498001 |
Glucose Oxidase from Aspergillus niger |
Sigma-Aldrich |
G2133 |
Catalase from bovine liver |
Sigma-Aldrich |
C3155 |
IGEPAL® CA-630 |
Sigma-Aldrich |
I8896 |
His-Trap FF Crude, 5 mL |
GE Healthcare |
17528601 |
Cy3 NHS Ester |
GE Healthcare |
PA13101 |
Cy5 NHS Ester |
GE Healthcare |
PA15100 |
Alexa Fluor™ 594 NHS Ester (Succinimidyl Ester) |
Thermo Scientific |
A20004 |
Abberior STAR 635P |
Abberior |
ST635P |
Janelia Fluor® 646 HaloTag® Ligand |
Promega |
GA112A |
RNase Inhibitor, Murine |
New England Biolabs |
M0314L |
Lipofectamine™ 3000 Transfection Reagent |
Thermo Scientific |
L3000001 |
Sodium (meta)arsenite (>90%) |
Millipore Sigma |
S7400-100G |
Experimental Models: Cell Lines |
Human: SH-SY5Y |
ATCC |
CRL-2266 |
Oligonucleotides |
Biotin-18mer: 5’- /biotin/rUrGrG rCrGrA rCrGrG rCrArG rCrGrA rGrGrC/3AmMO/ -3’ |
Niaki et al., 2020; IDT |
N/A |
U50-18mer: 5’- /5AmMC6/rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrG rCrCrU rCrGrC rUrGrC rCrGrU rCrGrC rCrA -3’ |
Niaki et al., 2020; IDT |
N/A |
U40: 5’- rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rUrUrU rU/3AmMO/ -3’ |
Niaki et al., 2020; IDT |
N/A |
Recombinant DNA |
pTHMT/FUSWT (encoding 6xHis-MBP-FUSWT) |
Niaki et al., 2020 |
N/A |
pTHMT/FUSR244C (encoding 6xHis-MBP-FUSR244C) |
Niaki et al., 2020 |
N/A |
pTHMT/FUSR216C (encoding 6xHis-MBP-FUSR216C) |
Niaki et al., 2020 |
N/A |
pTHMT/FUSR521G (encoding 6xHis-MBP-FUSR521G) |
Niaki et al., 2020 |
N/A |
pTHMT/FUSG156E (encoding 6xHis-MBP-FUSG156E) |
Niaki et al., 2020 |
N/A |
pTHMT/FUSG187S (encoding 6xHis-MBP-FUSG187S) |
Niaki et al., 2020 |
N/A |
pTHMT/FUSG399V(encoding 6xHis-MBP-FUSG399V) |
Niaki et al., 2020 |
N/A |
pTHMT/FUSRBD(encoding 6xHis-MBP-FUSRBD) |
Genscript |
N/A |
pTHMT/FUSLCD(encoding 6xHis-MBP-FUSLCD) |
Genscript |
N/A |
pTHMT/FUSG156A(encoding 6xHis-MBP-FUSG156A) |
Genscript |
N/A |
pTHMT/FUSG156D(encoding 6xHis-MBP-FUSG156D) |
Genscript |
N/A |
pTHMT/FUSG156Q(encoding 6xHis-MBP-FUSG156Q) |
Genscript |
N/A |
pTHMT/FUSG154E(encoding 6xHis-MBP-FUSG154E) |
Genscript |
N/A |
pTHMT/FUSG156P(encoding 6xHis-MBP-FUSG154E) |
Genscript |
N/A |
pTHMT/FUSWT-EGFP (encoding 6xHis-MBP-FUSWT-EGFP) |
Niaki et al., 2020 |
N/A |
pTHMT/FUSWT-mCherry (encoding 6xHis-MBP-FUSWT-mCherry) |
Genscript |
N/A |
pTHMT/FUSR244C-EGFP (encoding 6xHis-MBP-FUSR244C-EGFP) |
Genscript |
N/A |
pTHMT/FUSG156E-EGFP (encoding 6xHis-MBP-FUSG156E-EGFP) |
Genscript |
N/A |
pFUSWT-GFP_pcDNA3.1(+)-C-eGFP |
Genscript |
N/A |
pFUSWT-Halo_piggybac-EF1-Halo |
Li et al., 2016; Genscript |
N/A |
pFUSR244C-Halo_piggybac-EF1-Halo |
Li et al., 2016; Genscript |
N/A |
pFUSG156E-Halo_piggybac-EF1-Halo |
Li et al., 2016; Genscript |
N/A |
Software and Algorithms |
MATLAB and IDL scripts |
https://physics.illinois.edu/cplc/software/; This manuscript |
|
NIS-Elements Ar Package |
Nikon Inc. |
|
Adobe Photoshop CC |
Adobe (https://www.adobe.com/products/photoshop.html) |
|
Prism 7 |
GraphPad (https://www.graphpad.com/scientific-software/prism/) |
|
ImageJ (Fiji) |
NIH (https://imagej.nih.gov/ij/) |
|
RStudio |
RStudio (https://rstudio.com/products/rstudio/download/) |
|
Other |
Nunc™ Lab-Tek™ Chambered Coverglass |
Thermo Scientific |
155361 |
DNA Retardation Gels (6%) |
Invitrogen |
EC63655BOX |
Amicon Ultra-0.5 Centrifugal Filter Unit |
Millipore |
UFC501096 |
Zeba™ Spin Desalting Columns, 7K MWCO, 0.5 mL |
Thermo Scientific |
89883 |