Table 4. Numbers of significantly correlated gene-feature pairs for various network architectures.
Fixed correlation- and log2 gene expression thresholds are used: RT = 0.8, ET = 10. Numbers of unique genes, features and tissues involved are also shown (test dataset).
| Network | gene-feature pairs | unique genes | unique features | unique tissues |
|---|---|---|---|---|
| AlexNet | 424 | 55 | 112 | 11 |
| VGG11 | 1,175 | 70 | 204 | 12 |
| VGG13 | 2,149 | 70 | 307 | 13 |
| VGG16 | 2,176 | 74 | 346 | 13 |
| VGG19 | 1,227 | 71 | 321 | 14 |
| VGG11_bn | 34 | 19 | 7 | 3 |
| VGG13_bn | 59 | 22 | 17 | 6 |
| VGG16_bn | 51 | 20 | 11 | 4 |
| ResNet34 | 3 | 2 | 3 | 2 |
| Inception_v3 | 23 | 12 | 7 | 2 |
| VGG16_1FC | 2,714 | 69 | 363 | 13 |
| VGG16_avg1FC | 3,114 | 83 | 448 | 15 |