TABLE 3.
Strain-specific expressed genes (regulated and nonregulated) among the top 250 expressed genes in the seven different S. maltophilia clinical isolates analyzed
| Isolate and locus taga | Predicted function |
|---|---|
| S. maltophilia isolate 454 | |
| NIPOLPBK_03560 | MerR family transcriptional regulator |
| NIPOLPBK_03053 | Outer membrane protein assembly factor BamE |
| NIPOLPBK_03052 | Ferric iron uptake transcriptional regulator |
| NIPOLPBK_02989 | Pilin |
| NIPOLPBK_03740 | Cell wall hydrolase |
| NIPOLPBK_02530 | C4-dicarboxylate transporter |
| NIPOLPBK_03692 | Membrane protein |
| NIPOLPBK_03349; NIPOLPBK_00082 | ABC transporter ATP-binding protein |
| NIPOLPBK_02384 | DNA-binding response regulator |
| NIPOLPBK_02881 | Elongation factor G |
| NIPOLPBK_00124 | TonB-dependent siderophore receptor |
| NIPOLPBK_03559 | Integration host factor subunit alpha |
| NIPOLPBK_02127 | Serine/threonine protein kinase |
| NIPOLPBK_00518 | Thiol:disulfide interchange protein DsbA/DsbL |
| NIPOLPBK_01192 | STAS domain-containing protein |
| NIPOLPBK_01113 | Monothiol glutaredoxin, Grx4 family |
| NIPOLPBK_00840 | SH3 domain-containing-like protein 1 |
| NIPOLPBK_00961 | IS1595 family transposase ISAcif2 |
| NIPOLPBK_01249 | MexC, transporter periplasmic subunit |
| NIPOLPBK_03905 | Flagellin |
| NIPOLPBK_02388 | Peptide-methionine (R)-S-oxide reductase |
| S. maltophilia isolate 677 | |
| FLFIOBJN_01112 | Acetyl-CoA carboxylase biotin carrier protein |
| FLFIOBJN_02765 | NADP-dependent malic enzyme |
| FLFIOBJN_04431 | Flagellin |
| FLFIOBJN_00592 | Succinate dehydrogenase iron-sulfur subunit |
| FLFIOBJN_01823 | NADH-quinone oxidoreductase subunit K |
| FLFIOBJN_01373 | GNAT family N-acetyltransferase |
| FLFIOBJN_03492 | Single-stranded DNA-binding protein |
| FLFIOBJN_01536 | dTDP-glucose 4,6-dehydratase |
| FLFIOBJN_01537 | Glucose-1-phosphate thymidylyltransferase |
| FLFIOBJN_01538 | dTDP-4-dehydrorhamnose 3,5-epimerase |
| FLFIOBJN_01823 | NADH-quinone oxidoreductase subunit G |
| FLFIOBJN_01257 | Methylisocitrate lyase |
| FLFIOBJN_01869 | Peptidase |
| FLFIOBJN_02323 | Bifunctional proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase PutA |
| FLFIOBJN_01081 | NADP-dependent isocitrate dehydrogenase |
| S. maltophilia isolate SKK55 | |
| GPNADHDJ_01778 | Prepilin-type cleavage protein |
| GPNADHDJ_02908 | Transcription elongation factor GreA |
| GPNADHDJ_01676 | Enolase |
| GPNADHDJ_01978 | PhoH family protein |
| GPNADHDJ_02891 | Long-chain fatty acid-CoA ligase |
| GPNADHDJ_03134; GPNADHDJ_03863 | Acyl-CoA dehydrogenase |
| GPNADHDJ_03866 | TonB-dependent receptor |
| GPNADHDJ_02768 | Cell division protein, ZapA |
| GPNADHDJ_01975 | 4-hydroxy-tetrahydrodipicolinate synthase |
| GPNADHDJ_03864 | Alpha/beta hydrolase |
| GPNADHDJ_04044 | Acetyl-CoA C-acyltransferase |
| GPNADHDJ_01835 | Sulfoxide reductase catalytic subunit YedY |
| GPNADHDJ_03735 | Cupin domain-containing protein |
| GPNADHDJ_02081 | Fe-S biogenesis protein NfuA |
| GPNADHDJ_00856 | Ax21 family protein |
| GPNADHDJ_01207 | ParA family protein |
| GPNADHDJ_02348 | DNA-binding response regulator |
| GPNADHDJ_01752 | Oar protein |
| S. maltophilia isolate ICU331 | |
| EIELFIGP_03830 | Fis family transcriptional regulator |
| EIELFIGP_00484 | Membrane protein |
| EIELFIGP_00483 | EamA family transporter |
| EIELFIGP_03092 | ACR protein |
| EIELFIGP_04252 | IMP dehydrogenase |
| EIELFIGP_01515 | Translational throttle protein EttA |
| EIELFIGP_00265 | RNA helicase |
| EIELFIGP_02438 | AcrB/AcrD/AcrF family protein |
| EIELFIGP_03678 | TonB-dependent receptor |
| EIELFIGP_03829 | Type II toxin-antitoxin RelE/ParE family toxin |
| EIELFIGP_01306 | S-Adenosylmethionine decarboxylase proenzyme |
| EIELFIGP_01865 | FoF1 ATP synthase subunit A |
| EIELFIGP_04217 | Transcriptional regulator |
| EIELFIGP_03352 | Aspartate-semialdehyde dehydrogenase |
| EIELFIGP_03290 | Flagellin |
| EIELFIGP_03291 | Flagellin |
| S. maltophilia isolate PC239 | |
| PLCFDHLH_00300 | Transcriptional regulator |
| PLCFDHLH_01540 | Classical arabinogalactan protein 4 |
| PLCFDHLH_01650 | Helix-turn-helix domain-containing protein |
| PLCFDHLH_04366 | Penicillin-binding protein activator |
| PLCFDHLH_03625 | Dihydrolipoyllysine-residue acetyltransferase |
| PLCFDHLH_03306 | Iron-sulfur cluster assembly accessory protein |
| PLCFDHLH_03284 | methyltransferase domain-containing protein |
| PLCFDHLH_03397 | Fimbrial biogenesis outer membrane usher protein |
| PLCFDHLH_04557 | IS3 family transposase |
| S. maltophilia isolate PC240 | |
| IMCGPPIG_03647 | RidA family protein |
| IMCGPPIG_02449 | GlsB/YeaQ/YmgE family stress response membrane protein |
| IMCGPPIG_00866 | TonB-dependent receptor |
| S. maltophilia isolate PEG 13-68-68 | |
| AEPCKKLL_01703 | Polyketide cyclase |
| AEPCKKLL_03165 | Pilin |
| AEPCKKLL_02474 | Molybdopterin molybdenum transferase MoeA |
| AEPCKKLL_03864 | Flagellar hook protein FliD |
| AEPCKKLL_02476 | Molybdopterin converting factor subunit 2 protein |
| AEPCKKLL_00278 | Ubiquinone/menaquine biosynthesis C-methyltransferase UbiE |
| AEPCKKLL_01787 | TonB-dependent receptor |