TABLE 2.
Eleven characteristic nucleotide markers for clade I in comparison to other clades.
| Nucleotide Position in reference genome | Locus tag | Protein ID | Gene Length | Gene | Product | Cfv (n = 100) | Cff (n = 182) | Effect to reference sequence | Cfv AA | Cff AA |
| 39784 | CFF8240_0048 | ABK83415.1 | 396 | rpsH | ribosomal protein S8 | T | C | synonymous | L | L |
| 343646 | CFF8240_0373 | ABK82476.1 | 552 | conserved hypothetical protein | T | C | synonymous | L | L | |
| 399029 | CFF8240_0424 | ABK81969.1 | 708 | conserved hypothetical protein | C | T | synonymous | G | G | |
| 535915 | CFF8240_0528 | ABK83346.1 | 1131 | integral membrane protein-permease component, involved in lipoprotein release | T | C | synonymous | S | S | |
| 654050 | CFF8240_0641 | ABK82108.1 | 507 | Hit family protein | A | G | non-synonymous | I | V | |
| 979346 | CFF8240_0977 | ABK82797.1 | 747 | NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg | C | T | non-synonymous | C | Y | |
| 1020607 | CFF8240_1016 | ABK82995.1 | 879 | phosphatase, Ppx/GppA family | A | C | non-synonymous | D | E | |
| 1025195 | CFF8240_1023 | ABK83085.1 | 615 | translocator protein, LysE family | C | T | non-synonymous | S | N | |
| 1359201 | CFF8240_1380 | ABK83386.1 | 579 | general glycosylation pathway protein | C | T | non-synonymous | M | I | |
| 1438083 | CFF8240_1456 | ABK82820.1 | 1032 | hemE | uroporphyrinogen decarboxylase | A | G | synonymous | D | D |
| 1452736 | CFF8240_1473 | ABK83285.1 | 1791 | lepA | GTP-binding protein LepA | G | A | synonymous | T | T |