TABLE 1.
Ranking of hub genes in the gene/protein interaction network using cytoHubba.
| Rank |
Ranking methods in cytoHubba† |
|||||
| MCC | MNC | Degree | EPC | Closeness | Radiality | |
| 1 | RACK1B | RPS27AA | RPS27AA | OS06G0608300 | RPS27AA | OS06G0608300 |
| 2 | RPL5A | OS06G0608300 | OS06G0608300 | OsJ_13577 | OS06G0608300 | RPS27AA |
| 3 | OS08G0559200 | OsJ_13577 | DJC43 | RPS27AA | OsJ_13577 | RACK1B |
| 4 | OS07G0224000 | OS04G0107900 | OsJ_13577 | RPL5A | OS04G0107900 | OS08G0559200 |
| 5 | OsJ_33893 | RPL5A | OS04G0107900 | OS10G0569200 | RACK1B | DJC43 |
| 6 | RPS27AA | DJC43 | RACK1B | OsJ_25910 | DJC43 | RPL5A |
| 7 | OS10G0569200 | RACK1B | OS08G0559200 | RACK1B | RPL5A | OsJ_13577 |
| 8 | OS07G0124500 | OS10G0569200 | RPL5A | OS07G0224000 | OS08G0559200 | OS04G0107900 |
| 9 | OsJ_32984 | OS08G0559200 | OS10G0569200 | OS08G0559200 | OS10G0569200 | OsJ_25910 |
| 10 | OsJ_25910 | OsJ_33893 | OS07G0124500 | OS04G0107900 | OsJ_25910 | OS10G0569200 |
†Genes indicated in bold represent hub genes identified within the top 10 list by each of the six ranking methods in cytoHubba. MCC, maximal clique centrality; MNC, maximum neighborhood component; Degree, node connect degree; EPC, edge percolated component; Closeness, closeness centrality; Radiality, reachability to other nodes.