Table 1.

Pharmacogenomics data analysis methods, their input, output, and algorithms.

Method	Input	Output	Algorithm
MOLI	Multi-omics data	Drug response (IC50)	Deep learning
DSPLMF	Multi-omics data, chemical structures	Drug response (IC50)	Logistic Matrix Factorization
CancerDAP	Multi-omics data	Sub-pathway signatures for drug response	Random forest, logistic regression
DryNetMC	Drug treatment time-series gene expression data	Clinically relevant genes	Differential network analysis