Table 3.
Overview of the 14 gene expression studies analyzed in the present work.
| Study abbreviation | Sample source | Dataset | Platform ID | # cases, controls | # DEGs up | # DEGS down | Meta analysis group | Refs. |
|---|---|---|---|---|---|---|---|---|
| CF-Bronchial | Bronchial brushings | E-MTAB-360 | GPL6098 | 8, 16 | 384 | 425 | CF-Meta | 15 |
| CF-Nasal | Nasal brushings | GSE40445 | GPL10097 | 5, 5 | 403 | 556 | CF-Meta | 14 |
| CF-WholeBlood | Whole blood | GSE124548 | GPL20301 | 20, 20 | 1036 | 297 | CF-Meta | 44 |
| NEDD8 + C18 | CFBE41o- cells | GSE142610 | GPL10558 | 4, 4 | 47 | 54 | RNAi-Meta | – |
| NEDD8 | CFBE41o- cells | GSE142610 | GPL10558 | 5, 4 | 71 | 76 | RNAi-Meta | – |
| SYVN1 + C18 | CFBE41o- cells | GSE142610 | GPL10558 | 4, 4 | 93 | 129 | RNAi-Meta | – |
| SYVN1 | CFBE41o- cells | GSE142610 | GPL10558 | 5, 4 | 71 | 108 | RNAi-Meta | – |
| MIR138 | CFBE41o- cells | GSE142610 | GPL10558 | 4, 4 | 51 | 78 | RNAi-Meta | – |
| SIN3A | CFBE41o- cells | GSE142610 | GPL10558 | 4, 4 | 82 | 105 | RNAi-Meta | – |
| LowTmp-Mc | CFBE41o- cells | GSE142610 | GPL10558 | 5, 8 | 1381 | 1739 | LowTmp-Meta | – |
| HighLowTmp | CFBE41o- cells | GSE142610 | GPL10558 | 4, 8 | 1283 | 1690 | LowTmp-Meta | – |
| LowTmp-Sn | CFBE41o- cells | GSE70442 | GPL570 | 4, 4 | 1087 | 1293 | LowTmp-Meta | 11 |
| HighTmp | CFBE41o- cells | GSE142610 | GPL10558 | 4, 8 | 772 | 1027 | – | – |
| C18 | CFBE41o- cells | GSE142610 | GPL10558 | 5, 4 | 14 | 20 | – | – |
The Mc and Sn suffixes refer to author names for disambiguation.
Add’l additional, Ref reference, Tmp temperature.