Skip to main content
. 2020 Oct 22;12(11):1205. doi: 10.3390/v12111205

Table 3.

Viruses recovered during this study that share differing degrees of nucleotide (nt) identity within each gene segment. Viruses with the same color code within a given gene segment share >99.0% nt identity. The HA and NA of the first H5N9 (AI12-1161) and H6N1 (AI12-1541) viruses isolated are the reference sequences within those respective gene segments.

Virus Percent Nucleotide Similarity to Reference Sequence 3
PB2 PB1 PA NP MA NS HA NA
A/Ruddy turnstone/NJ 1/AI11-1678/2011(H7N7) ref ref ref ref ref ref N/A (H7) N/A (N7) Reference 4
A/Ruddy turnstone/FL 2/AI12-1161/2012/H5N9 92.0 99.6 99.6 91.9 96.9 95.1 ref ref Southeastern viruses
—this study
A/Ruddy turnstone/FL/AI12-1244/2012/H5N9 92.0 99.6 99.6 91.9 96.9 95.1 99.9 100.0
A/Ruddy turnstone/FL/AI12-1476/2012/H5N9 91.9 99.6 99.6 91.9 96.9 95.2 99.8 100.0
A/Ruddy turnstone/FL/AI12-1541/2012/H6N1 91.9 99.3 99.4 91.7 99.1 95.2 ref ref
A/Ruddy turnstone/FL/AI12-1590/2012/H6N1 91.7 99.3 99.4 91.7 99.1 95.2 100.0 100.0
A/Ruddy turnstone/FL/AI12-1591/2012/H6N1 91.9 99.2 99.4 91.7 99.1 95.2 99.9 100.0
A/Ruddy turnstone/FL/AI12-1592/2012/H6N1 91.9 99.2 99.4 91.7 99.1 95.2 99.9 100.0
A/Ruddy turnstone/FL/AI12-1593/2012/H6N1 91.9 99.3 99.4 91.7 99.1 95.2 100.0 100.0
A/Ruddy turnstone/FL/AI12-1683/2012/H6N1 91.9 99.3 99.4 91.7 99.1 95.2 99.9 100.0
A/Ruddy turnstone/FL/AI12-1638/2012/H6N1 91.9 99.3 99.4 91.7 99.1 95.2 99.9 99.9
A/Ruddy turnstone/FL/AI12-1340/2012/H6N1 91.9 99.3 99.4 91.7 99.1 95.2 100.0 100.0
A/Ruddy turnstone/FL/AI12-1368/2012/H6N1 92.0 99.3 99.5 93.7 99.1 95.1 99.9 99.9
A/Ruddy turnstone/NJ/AI12-2120/2012/H6N1 99.6 99.5 87.4 91.7 99.7 98.0 99.6 99.6 DE Bay viruses
—this study
A/Ruddy turnstone/NJ/AI12-2279/2012/H5N9 99.6 99.5 87.4 91.7 99.5 95.3 99.4 99.3
A/Ruddy turnstone/NJ/AI12-2166/2012/H6N1 99.6 96.1 87.4 91.7 96.7 98.2 99.5 99.5
A/Ruddy turnstone/NJ/AI12-2356/2012/H6N1 99.6 99.4 87.5 91.7 99.7 98.2 99.6 99.6
A/Ruddy turnstone/NJ/AI12-2375/2012/H6N1 91.8 93.5 99.4 93.8 96.8 95.1 99.2 93.0
A/Ruddy turnstone/NJ/AI12-2871/2012/H5N3 96.8 94.1 87.4 91.6 96.9 97.8 97.7 N/A
A/Ruddy turnstone/NJ/AI12-2010/2012/H6N1 99.6 99.4 87.4 91.7 99.6 98.2 99.6 99.6
A/Ruddy turnstone/NJ/AI12-2210/2012/H6N1 99.6 96.2 87.4 91.7 96.9 98.3 99.5 99.6
A/gull/MA 3/13JR00943/2013(H9N1) 91.9 96.0 87.7 93.7 97.5 97.0 N/A (H9) 93.0 Reference 5

1 New Jersey (NJ); 2 Florida (FL); 3 Massachusetts (MA) 4 Virus A/Ruddy turnstone/NJ/AI11-1678/2011/H7N7 was used as a “contributing” reference virus for internal genes; 5 Virus A/gull/MA/13JR00943/2013/H9N1 was used as a “receiving” reference sequence for internal genes and NA1.